Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g01250 ATGTTACCTCAAGCATTAGCTACACCTGCGTTCGTCCTTCTGATATTACTTTTCATTCTATCAGTTGCCCTGCTTCTAAATCCAAAAGGACATAAAAATGGTAGGAAATATCCACCAGGTCCGAAACCTCTGCCAATTATTGGACACCTCCACCTGCTGGGTAAACTCCCACACCGCTCCATTCACAATCTTTCACAAAAATATGGACCCATCATGTCCTTGAAGCTAGGACAGGTCCCAACCATTGTGATTTCGTCCCCTGAAACAGCAGAGCTAATCCTCAAGACCCATGACTCTGTTTTTGCTAGCAGGCCTTTAACTCAAGCATCCAAATACATTTGCTATGACAGTAAAGGCTTGATTTTCTCTGAGTACGGTTCCTACTGGCGCAATGTGACGAAGCTGTGCACCTTGGAGCTCTTAAGCTTGCTGAAAGTTCAAAGCTTTGCTCCTTTAAGGAGTGAGGAAGTAGGACTGTTTGTGAAATCACTTGAGAAATCAGCAGCCTCACGTGAGGTTGTGAATGTCACTGAGAAAGTTGGGAATCTTGTAGAGAATATTGTCCATAAAATGATTTGGGGTCGCAGTAACGATGATAAATTTGATATAAAAAGGCTTGTTCATGAAGTCCTGCACCTCATGGGAGTTTTTGATCTGGGAGATTATTTACCTTGGGGACTAGTAAGAAGGTACAAGAAAGCGCACAAAGAATTTGACGATATGTTAGAGAAAATCATCAAAGATCATGAGGCTTCCTCTCGCCTTAGCGACCAGAAAAGCGGGCAATCTGTTGACTTCACTGACATGCTGCTATCACATATGCACCAATCAAAGGATAAAAATGTTGTTAACCAAACTAACATCAAGGCTATTTTGTTGGATATGATTATCGGAGCAATTGACTCAACTATCATGACGGTTGATTGGACTATGGCAGAACTACTGAGGCACCCAAAGGTTATGAAGAAACTTCAAGATGAGTTAAAGAATGTAGTGGGTATGAGGAGGCTGGTAGAAGAAGCTGACATACCAAAGTTGCCATACCTCAATATGGTGGTGAAAGAGACCTTAAGATTATACCCACCTGCTCCGTTCCTTGTGCCCCGCGAGTCTACTGAAGATATTACAATCAATGGTTATTTCATTGCGAAAAAGTCACGAGTTTTAGTCAATTCATGGACACTAGGACGAGATCCTAAAGTTTGGTCAGATAATGCTGAGGAATATTATCCAGAAAGATTTGACAACACTGACATTGATCCTCATGGACTCCAATTTCAATTTTTACCATTTGGTTCTGGTCGTAGAAGGTGTCCCGGGATGCAATTGGGTTTAACTACGGTTCCGTTTATTCTAGCTCAGATAGTCCATTGCTTCAATTGGGAGCTTCCATTGGGCATCTCTGCTCATGACTTAGACATGACTGAGGAATTTGGCCTTACAACACCAAGAGTTCAGAATTTGCTAGCGATTCCAACTTATCGCTTAATAAATGAAGGTTGA 1503 0.4185 MLPQALATPAFVLLILLFILSVALLLNPKGHKNGRKYPPGPKPLPIIGHLHLLGKLPHRSIHNLSQKYGPIMSLKLGQVPTIVISSPETAELILKTHDSVFASRPLTQASKYICYDSKGLIFSEYGSYWRNVTKLCTLELLSLLKVQSFAPLRSEEVGLFVKSLEKSAASREVVNVTEKVGNLVENIVHKMIWGRSNDDKFDIKRLVHEVLHLMGVFDLGDYLPWGLVRRYKKAHKEFDDMLEKIIKDHEASSRLSDQKSGQSVDFTDMLLSHMHQSKDKNVVNQTNIKAILLDMIIGAIDSTIMTVDWTMAELLRHPKVMKKLQDELKNVVGMRRLVEEADIPKLPYLNMVVKETLRLYPPAPFLVPRESTEDITINGYFIAKKSRVLVNSWTLGRDPKVWSDNAEEYYPERFDNTDIDPHGLQFQFLPFGSGRRRCPGMQLGLTTVPFILAQIVHCFNWELPLGISAHDLDMTEEFGLTTPRVQNLLAIPTYRLINEG 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g01250 500 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 431 440 IPR017972 GO:0005506|GO:0016705
Trre3g01250 500 PRINTS P450 superfamily signature 351 362 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre3g01250 500 PRINTS P450 superfamily signature 298 315 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre3g01250 500 PRINTS P450 superfamily signature 429 438 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre3g01250 500 PANTHER CYTOCHROME P450 93A3-LIKE 13 496 - -
Trre3g01250 500 Pfam Cytochrome P450 38 485 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre3g01250 500 SUPERFAMILY Cytochrome P450 38 495 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre3g01250 500 FunFam Cytochrome P450 83B1 25 491 - -
Trre3g01250 500 Gene3D Cytochrome P450 26 490 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre3g01250 500 PRINTS E-class P450 group I signature 438 461 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre3g01250 500 PRINTS E-class P450 group I signature 65 84 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre3g01250 500 PRINTS E-class P450 group I signature 89 110 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre3g01250 500 PRINTS E-class P450 group I signature 428 438 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre3g01250 500 PRINTS E-class P450 group I signature 183 201 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre3g01250 500 PRINTS E-class P450 group I signature 307 333 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre3g01250 500 PRINTS E-class P450 group I signature 350 368 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre3g01250 500 PRINTS E-class P450 group I signature 287 304 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre3g01250 500 CDD CYP71-like 67 488 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g01250 Trre-Chr3 9427796 9429826 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g01250 36 497 Cytochrome P450 AT5G57260 39.588 6.82e-125 372
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g01250 - - lja:Lj3g3v0755410.1 644.039