Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g01249 ATGGTGCAGAGGCTCACATATCGCGGGCGGCACAGCTATGCCACAAAATCCAACCAGCATCGGGTTGTGAAGACTCCTGGTGGGAAGTTGGCGTACCAGACCACTAAGAAGAGAGCTAGCGGACCCAAATGCCCTGTCACTGGCAAGAGGATCCAAGGGATTCCACACTTGAGACATACTGAATACAAGAGGTCTAGGTTGTCTAGGAACCGCCAGACCATAAACCGAGCTTATGGTGGTGTGTAA 246 0.5203 MVQRLTYRGRHSYATKSNQHRVVKTPGGKLAYQTTKKRASGPKCPVTGKRIQGIPHLRHTEYKRSRLSRNRQTINRAYGGV 81
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g01249 81 ProSitePatterns Ribosomal protein L34e signature. 15 28 IPR018065 -
Trre3g01249 81 PANTHER 60S RIBOSOMAL PROTEIN L34 1 81 IPR008195 GO:0003735|GO:0005840|GO:0006412
Trre3g01249 81 Gene3D - 1 38 - -
Trre3g01249 81 Gene3D - 39 81 - -
Trre3g01249 81 MobiDBLite consensus disorder prediction 22 50 - -
Trre3g01249 81 PRINTS Ribosomal protein L34 signature 13 26 IPR008195 GO:0003735|GO:0005840|GO:0006412
Trre3g01249 81 PRINTS Ribosomal protein L34 signature 26 43 IPR008195 GO:0003735|GO:0005840|GO:0006412
Trre3g01249 81 PRINTS Ribosomal protein L34 signature 44 54 IPR008195 GO:0003735|GO:0005840|GO:0006412
Trre3g01249 81 PRINTS Ribosomal protein L34 signature 66 81 IPR008195 GO:0003735|GO:0005840|GO:0006412
Trre3g01249 81 Pfam Ribosomal protein L34e 1 81 IPR008195 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g01249 Trre-Chr3 9409922 9410167 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g01249 1 81 Cytoplasmic Ribosomal Protein Gene Family AT1G69620 91.358 3.49e-51 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g01249 K02915 - csav:115695906 159.458