Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g01248 ATGGTGCAGAGGCTCACATATCGCGGGCGGCACAGCTATGCCACAAAATCCAACCAGCATCGGGTTGTGAAGACTCCTGGTGGGAAGTTGGCGTACCAGACCACTAAGAAGAGAGCTAGCGGACCCAAATGCCCTGTCACTGGCAAGAGGATCCAAGGGATTCCACACTTGAGACATACTGAATACAAGAGAGAAAGGATTATCCGCGCTTTCCTTGTTGAAGAGCAAAAAATTGTGAAGAAGGTATTGAGGATTCAGAAGGAAAAAGAAAAGCTAGCATCCAAGAACTAA 291 0.4742 MVQRLTYRGRHSYATKSNQHRVVKTPGGKLAYQTTKKRASGPKCPVTGKRIQGIPHLRHTEYKRERIIRAFLVEEQKIVKKVLRIQKEKEKLASKN 96
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g01248 96 ProSitePatterns Ribosomal protein L34e signature. 15 28 IPR018065 -
Trre3g01248 96 Gene3D - 1 38 - -
Trre3g01248 96 PANTHER 60S RIBOSOMAL PROTEIN L34 64 91 IPR008195 GO:0003735|GO:0005840|GO:0006412
Trre3g01248 96 MobiDBLite consensus disorder prediction 22 50 - -
Trre3g01248 96 Gene3D - 39 64 - -
Trre3g01248 96 Pfam Ribosomal protein L34e 1 64 IPR008195 GO:0003735|GO:0005840|GO:0006412
Trre3g01248 96 Gene3D - 65 96 - -
Trre3g01248 96 PRINTS Ribosomal protein L34 signature 13 26 IPR008195 GO:0003735|GO:0005840|GO:0006412
Trre3g01248 96 PRINTS Ribosomal protein L34 signature 26 43 IPR008195 GO:0003735|GO:0005840|GO:0006412
Trre3g01248 96 PRINTS Ribosomal protein L34 signature 44 54 IPR008195 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g01248 Trre-Chr3 9409805 9410167 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g01248 1 95 Cytoplasmic Ribosomal Protein Gene Family AT1G69620 71.429 6.55e-53 159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g01248 K02915 - egr:104433623 167.162