Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g01234 ATGTATTGGGGTGGAATGATGTCAGGCCACATGGGCAGGGGTTTCATTGAAGGAGAAGTATGGAGGAAGGGACCATGGACTGCTGAAGAAGATAGGTTGCTGATTGAGTATGTTAGGGTGCATGGTGAAGGAAGATGGAACTCTGTTGCTAGGCTTGCAGGATTGAAAAGAAATGGGAAGAGTTGCAGATTGAGATGGGTGAATTATCTCAGACCAGACCTCAAGAGGGGTCAGATAACACCACAAGAAGAGAGCATCATTCTAGAGCTGCATGCTAGATGGGGAAACAGGCCTAGACCCGAACCAAACCAAGCTGATCTCAATTGGAATGGTTCAGGTGATCGGTTTTAA 351 0.4672 MYWGGMMSGHMGRGFIEGEVWRKGPWTAEEDRLLIEYVRVHGEGRWNSVARLAGLKRNGKSCRLRWVNYLRPDLKRGQITPQEESIILELHARWGNRPRPEPNQADLNWNGSGDRF 116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g01234 116 MobiDBLite consensus disorder prediction 95 116 - -
Trre3g01234 116 ProSiteProfiles Myb-like domain profile. 22 70 IPR001005 -
Trre3g01234 116 FunFam Myb transcription factor 23 75 - -
Trre3g01234 116 SUPERFAMILY Homeodomain-like 24 97 IPR009057 -
Trre3g01234 116 SMART sant 22 72 IPR001005 -
Trre3g01234 116 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 22 74 IPR017930 -
Trre3g01234 116 Gene3D - 23 75 - -
Trre3g01234 116 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 21 97 IPR044676 GO:0003700|GO:0006355|GO:0043565
Trre3g01234 116 CDD SANT 25 70 IPR001005 -
Trre3g01234 116 Pfam Myb-like DNA-binding domain 23 70 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g01234 Trre-Chr3 9303139 9303863 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g01234 19 97 MYB Transcription Factor Family AT4G13480 94.937 2.43e-50 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trre3g01234 Myb_DNA-binding 6.4e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g01234 K09422 - gmx:100795981 196.823