Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g01220 ATGAATCTCAACTACCTGATCACCGGAGAAGATATCCACCATGAAATGGTTCTGGGACGAGAAGTCCTACACAAGGCGAGAATTGTATTAACAGCTGATGTTATGAGGGCAAGCGCGGGACAAGGAAGCGGCGCGACTAAGGTGGAAGCAGAGCAAGAAGCACGCAGGATGGGAAGCTTCGGCGACGAGTTCTGGCACGTCAAGATCGCGCCACGTACAAAACCAGCCAACCGTGGCCTGGGAGATAGCGAAAGAACTGGCGGCACTCAGGATGAAAGAATGGATGATCCACACACACTCGAAGTACAAGGTACGGAACTCGGTGAAGGTGGATTCGCTTTCGTTTATCTCGTTAAGGAAGCTCCTAATGACTCTGCTACCGGTGGTCTCGCTAATAAACTCAAAGACTCTTCTCATCTCTTCGATGATGGATCTTATGCTATGAAAAAGGTTCTCATTCAGAACAACAAGCAGCTGGAGTTGGTCAGAGAGGAGATACGCGTCTCGTCACTGTTTAGTCACCCCAATCTCCTCCCACTTCTTGATCATGCAATCATTTCTGTTAAGCCTACCCCAGAAACATCTTGGAGCCATGAAGCATACTTGTTATTTCCAGTTCATTTGGATGGAACATTGTTAGACAATGCCAAAACAATGAAAGCCAAAAAGGAACACTATTCTACCTCAGATGTTCTTCAAATATTTTGTTTTAACCCTGTAAAATCAACTCAACAGCTTTGTGCAGGACTTAAGCACATGCACAATTTAGATCTTCCATATGCACACAATGATGTCAAACATGGTAATGTTCTCCTAACACACAGAAAAGGACAATCACCACTGGCCATACTGATGGATTTTGGCAGTGCTCGTCCTGCAAGGAGGCATATTAGCTCCAAATCAAAGGCACTCCAGTTGCAGGAATGGGCATCTGAACATTGCTCTACTCCTTTCCGATCCTCTGAGCTGTGGGATTGCCCAAGCCATGCTGATATAGACGAGAGGACTGACATTTGGTCACTAGGATGCACATTATATTCAATAATGTGA 1050 0.4552 MNLNYLITGEDIHHEMVLGREVLHKARIVLTADVMRASAGQGSGATKVEAEQEARRMGSFGDEFWHVKIAPRTKPANRGLGDSERTGGTQDERMDDPHTLEVQGTELGEGGFAFVYLVKEAPNDSATGGLANKLKDSSHLFDDGSYAMKKVLIQNNKQLELVREEIRVSSLFSHPNLLPLLDHAIISVKPTPETSWSHEAYLLFPVHLDGTLLDNAKTMKAKKEHYSTSDVLQIFCFNPVKSTQQLCAGLKHMHNLDLPYAHNDVKHGNVLLTHRKGQSPLAILMDFGSARPARRHISSKSKALQLQEWASEHCSTPFRSSELWDCPSHADIDERTDIWSLGCTLYSIM 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g01220 349 Gene3D Transferase(Phosphotransferase) domain 1 209 349 - -
Trre3g01220 349 PANTHER SERINE/THREONINE-PROTEIN KINASE 16 105 349 - -
Trre3g01220 349 ProSiteProfiles Protein kinase domain profile. 101 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre3g01220 349 Gene3D Phosphorylase Kinase; domain 1 88 205 - -
Trre3g01220 349 SMART serkin_6 101 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre3g01220 349 Pfam Protein kinase domain 142 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre3g01220 349 ProSitePatterns Serine/Threonine protein kinases active-site signature. 260 272 IPR008271 GO:0004672|GO:0006468
Trre3g01220 349 SUPERFAMILY Protein kinase-like (PK-like) 105 348 IPR011009 -
Trre3g01220 349 MobiDBLite consensus disorder prediction 73 95 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g01220 Trre-Chr3 9184245 9187920 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g01220 103 349 MAP Kinase Kinase Kinase AT5G66850 25.506 7.31e-08 52.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NAK Trre3g01220 Pkinase 3e-17 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g01220 K08856 - gmx:100803659 414.846