Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g01208 ATGGTGCAGAGGCTCACATATCGCGGGCGGCACAACTATGCCACAAAATCCAACCAGCATCGGGTTGTGAAGACTCCTGGTGGGAAGTTGGCGTGCCAGACCACTAAGAAGAGAGCTAGCGGACCCAAATGCCCTGTCACTGGCAAGAGGATCCAAGGGATTCCACACTTGAGACATACTGAATACAAGAGGTCTAGGTTGTCTAGGAACCGCCAGACCATAAACCGAGCTTATGGTGGTGTGTTATTTGGAGGAGCTGTTAGAGAAAGGATTATCCGCGCTTTCCTTGTTGAAGAGCAAAAAATTGTGAAGAAGGTATTGAGGATTCAGAAGGAAAAAGAAAAGCTAGCATCCAAGAACTAA 363 0.4766 MVQRLTYRGRHNYATKSNQHRVVKTPGGKLACQTTKKRASGPKCPVTGKRIQGIPHLRHTEYKRSRLSRNRQTINRAYGGVLFGGAVRERIIRAFLVEEQKIVKKVLRIQKEKEKLASKN 120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g01208 120 ProSitePatterns Ribosomal protein L34e signature. 15 28 IPR018065 -
Trre3g01208 120 Gene3D - 39 120 - -
Trre3g01208 120 PRINTS Ribosomal protein L34 signature 66 88 IPR008195 GO:0003735|GO:0005840|GO:0006412
Trre3g01208 120 PRINTS Ribosomal protein L34 signature 13 26 IPR008195 GO:0003735|GO:0005840|GO:0006412
Trre3g01208 120 PRINTS Ribosomal protein L34 signature 44 54 IPR008195 GO:0003735|GO:0005840|GO:0006412
Trre3g01208 120 PRINTS Ribosomal protein L34 signature 26 43 IPR008195 GO:0003735|GO:0005840|GO:0006412
Trre3g01208 120 PANTHER 60S RIBOSOMAL PROTEIN L34 1 115 IPR008195 GO:0003735|GO:0005840|GO:0006412
Trre3g01208 120 MobiDBLite consensus disorder prediction 24 50 - -
Trre3g01208 120 Pfam Ribosomal protein L34e 1 96 IPR008195 GO:0003735|GO:0005840|GO:0006412
Trre3g01208 120 Gene3D - 1 38 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g01208 Trre-Chr3 9099928 9100290 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g01208 1 119 Cytoplasmic Ribosomal Protein Gene Family AT1G69620 86.555 6.96e-72 208
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g01208 K02915 - egr:104433623 217.238