Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g01188 ATGGATGGCGGCGATATTGGCAGCGCTACGGCGGTGACAAGAAATAGAGACGATTTGGCTGGAGAGATGATGCTATACAGCGAGCTCAAGACTATCTTGATCGGCGATTTGCAGGATTGGATGGATTCACATCACCTCGTAACCAGCTTCAGTACTGGCGGCGAGATGTATTGTGCGGACGTGATTAAAAACAAGCAAACCGGTCAATCATTAGGTTATGGATTTATCGAGTTTGGTTCTCGTAGTGCTTCTGAAAGATTTTTAAAGAGACACCAAGGTACCATTGTGCCGAGTAATGGCCAGTACCACCGAATGGATTGGACAACTTGCAATATCGTGGAGAGGCATTCTTGGTATTGTGAGTAG 366 0.4617 MDGGDIGSATAVTRNRDDLAGEMMLYSELKTILIGDLQDWMDSHHLVTSFSTGGEMYCADVIKNKQTGQSLGYGFIEFGSRSASERFLKRHQGTIVPSNGQYHRMDWTTCNIVERHSWYCE 121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g01188 121 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 28 113 - -
Trre3g01188 121 SUPERFAMILY RNA-binding domain, RBD 28 107 IPR035979 GO:0003676
Trre3g01188 121 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 30 110 IPR000504 GO:0003723
Trre3g01188 121 SMART rrm1_1 31 106 IPR000504 GO:0003723
Trre3g01188 121 Gene3D - 29 109 IPR012677 -
Trre3g01188 121 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 32 98 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g01188 Trre-Chr3 8887639 8889856 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g01188 45 113 C2H2 Transcription Factor Family AT2G19380 33.333 8.97e-06 41.6