Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g01186 ATGACTGTGACTGATAGGCGCACTGGTAGGTCTAAGGGTTATGGCTTTGTGAGGTTTGCTGATGAGGGTGAACAAATGAGGGCTATAACTGAGATGCAAGGGGTTCTTTGTTCAACAAGACCCATGAGGATTAAACTAGCTACTAATAAGAAACCTGCTGCTACCACTCAGCCGAAAGATTCGGCGGGAAGCATGATGCAGCCTGCAAATGGTGCTATGCCTCCCAACGTCATGGGGCCACTCCCCGACGAGGTCCATACTCTTTGGATCGGCGATTTGGAGTATTGGATGGATGAGAATTACCTCCAAACATGCTTCAGTGAAACTGGCACAATATAA 339 0.4779 MTVTDRRTGRSKGYGFVRFADEGEQMRAITEMQGVLCSTRPMRIKLATNKKPAATTQPKDSAGSMMQPANGAMPPNVMGPLPDEVHTLWIGDLEYWMDENYLQTCFSETGTI 112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g01186 112 MobiDBLite consensus disorder prediction 47 78 - -
Trre3g01186 112 Gene3D - 2 60 IPR012677 -
Trre3g01186 112 SUPERFAMILY RNA-binding domain, RBD 3 112 IPR035979 GO:0003676
Trre3g01186 112 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 3 59 - -
Trre3g01186 112 MobiDBLite consensus disorder prediction 50 64 - -
Trre3g01186 112 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1 49 IPR000504 GO:0003723
Trre3g01186 112 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 3 35 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g01186 Trre-Chr3 8885935 8887118 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g01186 8 80 Eukaryotic Initiation Factors Gene Family AT1G49760 43.243 6.01e-07 44.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g01186 - - cam:105852200 104.375