Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g01185 ATGAGAAACCTGCTGCCACCACTCAGTCGAAAGGTTTTACATTCAATGCCGTGGAGAGGTCGTCTAGGCAAGATGATGGTCCTGAATCCTGATCATAGCATTTTTGTTGGTAATTTGTCTGGTCATGTTACTGATGACCTTCTTCAAGAGACTTTTAGAGCTCGTTATAACTCGGTGGTCGGGCCAATGACTGTGACTGATAGGCGCACTGGTAGGTCTAAGGGTTATGGCTTTGTGAGGTTTGCTGATGAGGGTGAACAAATGAGGGCTATAACTGAGATGCAAGGGGTTCTTTGTTCAACAAGACCCATGAGGATTAAACTAGCTACTAATAAGAAACCTGCTGCTACCACTCAGCCGAAAGATTCGGCGGGAAGCATGATGCAGCCTGCAAATGGTGCTATGCCTCCCAACGTCATGGGGCCACTCCCCGACGAGGTCCATACTCTTTGGATCGGCGATTTGGAGTATTGGATGGATGAGAATTACCTCCAAACATGCTTCAGTGAAACTGGCACAATATAA 525 0.4686 MRNLLPPLSRKVLHSMPWRGRLGKMMVLNPDHSIFVGNLSGHVTDDLLQETFRARYNSVVGPMTVTDRRTGRSKGYGFVRFADEGEQMRAITEMQGVLCSTRPMRIKLATNKKPAATTQPKDSAGSMMQPANGAMPPNVMGPLPDEVHTLWIGDLEYWMDENYLQTCFSETGTI 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g01185 174 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 145 172 - -
Trre3g01185 174 MobiDBLite consensus disorder prediction 111 131 - -
Trre3g01185 174 Gene3D - 23 135 IPR012677 -
Trre3g01185 174 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 32 111 IPR000504 GO:0003723
Trre3g01185 174 SMART rrm1_1 33 107 IPR000504 GO:0003723
Trre3g01185 174 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 34 97 IPR000504 GO:0003723
Trre3g01185 174 FunFam Polyadenylate-binding protein RBP47B 22 122 - -
Trre3g01185 174 MobiDBLite consensus disorder prediction 112 126 - -
Trre3g01185 174 CDD RRM2_SECp43_like 31 110 - -
Trre3g01185 174 SUPERFAMILY RNA-binding domain, RBD 30 174 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g01185 Trre-Chr3 8885935 8887304 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g01185 33 142 Eukaryotic Initiation Factors Gene Family AT1G49760 39.640 1.81e-10 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g01185 - - cam:105852200 151.369