Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g01179 ATGCAGAACGATGAAGGACAAATCACCGAGCTCTATATTCCTAGGAAGTGTTCTGCTACAAACAGATTGATTACTGCTAAGGATCATGCTTCTGTTCAGATCAACATCGGTCATTTGGATGAGAGCGGTCTTTACAATGGTCAATTCTCCACTTTTGCTCTCTGTGGCTTTACTCGTGCTCAGGGAGATGCCGACAGTGGAATTGATCGCTTGTGGCAGAAAAAGAAAACCGAACTTAAGCAATAG 246 0.435 MQNDEGQITELYIPRKCSATNRLITAKDHASVQINIGHLDESGLYNGQFSTFALCGFTRAQGDADSGIDRLWQKKKTELKQ 81
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g01179 81 Gene3D - 1 80 IPR038579 -
Trre3g01179 81 PANTHER 40S RIBOSOMAL PROTEIN S21 1 77 IPR001931 GO:0003735|GO:0005840|GO:0006412
Trre3g01179 81 Pfam Ribosomal protein S21e 1 76 IPR001931 GO:0003735|GO:0005840|GO:0006412
Trre3g01179 81 PIRSF RPS21e 1 81 IPR001931 GO:0003735|GO:0005840|GO:0006412
Trre3g01179 81 ProSitePatterns Ribosomal protein S21e signature. 11 19 IPR018279 GO:0003735|GO:0005840|GO:0006412
Trre3g01179 81 FunFam 40S ribosomal protein S21 1 81 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g01179 Trre-Chr3 8823540 8824960 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g01179 1 81 Cytoplasmic Ribosomal Protein Gene Family AT5G27700 85.185 9.96e-52 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g01179 K02971 - csav:115695946 155.221