Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g01175 ATGGACTCGAAAACTAGTGCTAGAGCTCTCTCAAAGCAACAACAGAAAACATCTGGGATTCAAACACCTGAGGTGAAAGACCTCAAGTTTTCTTCGCTGTCGCTTCAAAAGACAGGGAAATCTGAGTCTGAAGATTTGTCTAAGTCTGTACAGAACACGTCAAAGCAGAATATTGGGGAAATTTATGAAAGCAAAAATTTTGGTTCTGGTGCTTCTTCATCCGCTCATGGAAAAGCATCGGGAGAGAACATAGGTTCACAGGAAAGCTCTATTAATCAAGACAAGAAGACCTCAGAATATGGAAGTGTGAAGAATAGTTCGGTTTCTGCCAAAGCTAGCGACGGGGCCAGTAGTATTGCAAAGACAAGTGGTAGTGCTAAAATCAGTGACCGAGCTGATTTTGTTGAGAGTGGTAAGAGCAGTATTTGCCGAGGAAGTACAAGCAGTGATGTGAGTGATGAGAGTACTTGTAGTAGCTTTAGTAGCAGCGTAAACAAGCCTCATAAGGCAAATGACATGAGATGGGAAGCTATCCAAGTGGTAAGAACTAGAGACGGAGCATTGGGTTTAGGCCACTTTAGACTTCTAAAGAGGTTGGGCTGTGGAGATATCGGCAGTGTTTACCTCTCCGAGTTGAGTGGAACTAAATGTTACTTCGCAATGAAGGTGATGGACAAAGGGTCGTTAGCAAGTCGTAAGAAGTTACTTCGTGCTCAGACGGAACGGGAAATTCTTCAGTCACTTGACCACCCGTTTCTCCCGACTTTGTACACTCATTTTGAGACGGAGAAGTTTTCATGCTTGGTGATGGAATTCTGCCCGGGTGGAGACCTCCATACTCTTCGGCAGAAACAACCAGGGAAGCACTTCCCCGAGCAGGCAGTAAAATTTTATGTGGCAGAGGTCCTACTGGCGATGGAGTACCTACACATGCTTGGGATTGTATACCGTGATCTTAAGCCAGAAAATGTCCTTGTTAGGGATGATGGACATATTATGCTCTCCGACTTTGACCTTTCCCTCCGATGTGCTGTTAGTCCAACCCTCGTTAAATCCTCTTCAATGGATTCGGAGCCTTTGAGAAAGAATACTGGTTACTGTGCTCAGCCTGCGTGTATTGAGCCGCCGTCCTGCATTCAGCCATCCTGTGTTGCTCCTACCTCGTGTTTTTCACCCCGTCTCTTTTCTAGCAAATCAAAGAAAGAACGGAAGCCCAAAACTGAACTTGGCAATCAAGTTAGTCCTCTACCTGAGCTCATTGCAGAGCCCACCGATGCTCGGTCTATGTCGTTTGTTGGAACCCACGAATACTTGGCACCTGAGATAATCAAGGGTGAAGGTCACGGTAGTGCAGTTGATTGGTGGACTTATGGAATCTTTCTCTACGAGTTGTTGTTCGGCAAAACTCCTTTTAAGGGATCTGGGAACCGAGCCACGCTGTTTAATGTAGTAGGTCAGCCGCTACGATTTCCCGAAGCACCTGTCGTCAGCTTTGCAGCAAGGGATCTTATAAGGGGTTTGCTTGTAAAGGAACCTCAGCACAGATTGGCATATAAAAGAGGCGCAACCGAGATTAAGCAACATCCATTTTTCGAAGGTGTGAATTGGGCGTTGATCCGATGTGCTACCCCACCCGAGATTCCAAAGGCTGTTGAGTTTGAGAAGATACCATCACCGGCTGCCTCTTCCGCCAGCGAAAAGACTGTTGTTAACCACATGCCAACAGCTCCTAATCAGAAAGGTTCTGATAATTATCTGGAGTTTGATTTCTTCTAG 1776 0.4589 MDSKTSARALSKQQQKTSGIQTPEVKDLKFSSLSLQKTGKSESEDLSKSVQNTSKQNIGEIYESKNFGSGASSSAHGKASGENIGSQESSINQDKKTSEYGSVKNSSVSAKASDGASSIAKTSGSAKISDRADFVESGKSSICRGSTSSDVSDESTCSSFSSSVNKPHKANDMRWEAIQVVRTRDGALGLGHFRLLKRLGCGDIGSVYLSELSGTKCYFAMKVMDKGSLASRKKLLRAQTEREILQSLDHPFLPTLYTHFETEKFSCLVMEFCPGGDLHTLRQKQPGKHFPEQAVKFYVAEVLLAMEYLHMLGIVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLVKSSSMDSEPLRKNTGYCAQPACIEPPSCIQPSCVAPTSCFSPRLFSSKSKKERKPKTELGNQVSPLPELIAEPTDARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTYGIFLYELLFGKTPFKGSGNRATLFNVVGQPLRFPEAPVVSFAARDLIRGLLVKEPQHRLAYKRGATEIKQHPFFEGVNWALIRCATPPEIPKAVEFEKIPSPAASSASEKTVVNHMPTAPNQKGSDNYLEFDFF 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g01175 591 ProSitePatterns Serine/Threonine protein kinases active-site signature. 314 326 IPR008271 GO:0004672|GO:0006468
Trre3g01175 591 SMART serkin_6 193 531 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre3g01175 591 Pfam Protein kinase domain 194 345 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre3g01175 591 Pfam Protein kinase domain 428 531 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre3g01175 591 CDD STKc_phototropin_like 192 549 - -
Trre3g01175 591 PANTHER FLIPPASE KINASE 1-RELATED 24 555 - -
Trre3g01175 591 SUPERFAMILY Protein kinase-like (PK-like) 167 568 IPR011009 -
Trre3g01175 591 Gene3D Transferase(Phosphotransferase) domain 1 425 549 - -
Trre3g01175 591 ProSiteProfiles Protein kinase domain profile. 193 531 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre3g01175 591 FunFam Serine/threonine-protein kinase AGC1-7 424 549 - -
Trre3g01175 591 FunFam serine/threonine-protein kinase D6PK-like 277 344 - -
Trre3g01175 591 MobiDBLite consensus disorder prediction 1 122 - -
Trre3g01175 591 MobiDBLite consensus disorder prediction 139 167 - -
Trre3g01175 591 MobiDBLite consensus disorder prediction 140 167 - -
Trre3g01175 591 Gene3D Transferase(Phosphotransferase) domain 1 277 345 - -
Trre3g01175 591 FunFam Serine/threonine-protein kinase D6PK-like 191 276 - -
Trre3g01175 591 Gene3D Phosphorylase Kinase; domain 1 191 276 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g01175 Trre-Chr3 8788334 8790770 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g01175 94 591 AGC Kinase Gene Family AT5G47750 84.770 0.0 860
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Trre3g01175 Pkinase 2.4e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g01175 K08286 - gmx:100798088 992.645