Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g01153 ATGGACCTCTTCGCCGCCGAACACGTCGCTCCATTTCCCGACTCCGGCGACCTTCTCTTCGCCGCCGGTCTCCTCTCCTCTCACCAAAATCCCCAAAAACTCCGCCCTATCAGGTCCCTCCCTCCTCCTCCTCCTCCTCCCGGTTACCTCGTTCACTCTCAGTCCCCTCCCAACCCTCAGTCTCTGGAACCTTCCATCGAGTCGCAAAACCCGACCGAATCCGGGTCGGGTCATTCCCAGTTGCCTCCTGCACTCGAACCCGGTTCGTCTTTGGATGATGACGACGATGATGATGATGTGGATAATTCATCTGCAAATACTAAAGAATTTGGCTCCAGAAAGAAAAGGAAAAAGACGGCGAGAAAGCTTGAAGATTTTGTATCAAATTTGGTGAAGAGGGTGATGGAAAAGCAAGAGCAGATGCATAACGAATTGATGGAAATGATAGATAAGAAGGAAAAGGAAAGAGTACAGAGAGAAGAAGCTTGGAGGCGCGAGGAGATGGAAAGAATTAAGAAGGACGAAGAAGCTAGAGCGGCAGAAAGGTCTCGTAGTTTAGCTCTCATATCGTACATTCAGAAACTATTACGTCATGAAATTCAGATTCCTCAACCAGCAGAAGAAAGCAAGAAACTATTAAGTCAAGCAATTCAGATCTTTCAGCCAGCTGAAGGAAGGGGAAAAGGAGAAGAGGGTGAAGTTGAGATGAACAACAAAAGAAATTTCAACGGCGATCCGAGTAACAATTTATGGCCAGTTGTGGTGAACAACAACAAAAGGGATTTCAACGGCGATACAATAAACAATAGATGGCCAGATGTGGAAGTACAAGCGCTCATAACAGTAAGAACTTCATTGGAACACAAGTTCGGTCATATGGGATCGAAAGGATCAATATGGGAGGAGATATCTGATGCAATGCGAGACATGGGATACAATCGTTCTGCGAAAAAGTGTAAGGAGAAATGGGAAAACATCAACAAGTACTATAAGAGGACAGTGGGAAGCGGCAAGAAACGGCCTCTAAATAGTAAAACTTGTCCTTACTTCGACGAATTGGACCATCTGTATAGAAATGGATCCTCCAACAGCCTTGGAACTGCATTAACCATTACCAACAATGTTCCCATTAGTGAAGAAAAGGAGCAAGTCTCTTTTGCCGTGGAAATGAGAAGCTAA 1179 0.4538 MDLFAAEHVAPFPDSGDLLFAAGLLSSHQNPQKLRPIRSLPPPPPPPGYLVHSQSPPNPQSLEPSIESQNPTESGSGHSQLPPALEPGSSLDDDDDDDDVDNSSANTKEFGSRKKRKKTARKLEDFVSNLVKRVMEKQEQMHNELMEMIDKKEKERVQREEAWRREEMERIKKDEEARAAERSRSLALISYIQKLLRHEIQIPQPAEESKKLLSQAIQIFQPAEGRGKGEEGEVEMNNKRNFNGDPSNNLWPVVVNNNKRDFNGDTINNRWPDVEVQALITVRTSLEHKFGHMGSKGSIWEEISDAMRDMGYNRSAKKCKEKWENINKYYKRTVGSGKKRPLNSKTCPYFDELDHLYRNGSSNSLGTALTITNNVPISEEKEQVSFAVEMRS 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g01153 392 ProSiteProfiles Myb-like domain profile. 263 327 IPR001005 -
Trre3g01153 392 FunFam Trihelix transcription factor GT-2 271 332 - -
Trre3g01153 392 MobiDBLite consensus disorder prediction 30 121 - -
Trre3g01153 392 PANTHER FI21293P1 70 379 - -
Trre3g01153 392 MobiDBLite consensus disorder prediction 36 53 - -
Trre3g01153 392 SMART sant 267 329 IPR001005 -
Trre3g01153 392 Gene3D - 271 332 - -
Trre3g01153 392 CDD GT1 269 333 - -
Trre3g01153 392 Coils Coil 135 162 - -
Trre3g01153 392 Pfam Myb/SANT-like DNA-binding domain 269 356 IPR044822 -
Trre3g01153 392 MobiDBLite consensus disorder prediction 54 79 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g01153 Trre-Chr3 8359806 8362107 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g01153 114 363 Trihelix Transcription Factor Family AT5G47660 41.036 6.16e-53 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Trre3g01153 Myb_DNA-bind_4 1.9e-22 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g01153 - - tpra:123899422 593.578