Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g01150 ATGGGAAATGTCAATGGAAGAGAAGAAGATTTCAACGGCACAGTATCAGAAATTTCATCAGAAGAAGATGGCGGAGGAGGAGAAAGAGAAAGAGAGGGTGGTTTTGACACTGTCAGCAGCGATTGTATGTCTACTCCTGATGGGGTTGTTGAAAATCCTTCACCTTCTGAATTAATGGGTCATTCTCCACCTGCTAGCCCTAGAACAACTCAATCTCCACTCATGTTTTCCCCTCAAGTTCCGGTGGTTCCACTACAAAGACCTGATGAGATGCAAGTTCCAAACCCTTCTTGGATGCAAACTACTTCAGGGTATGAGGATATGTTTAGTGAAATTGGAATACCGACGATGATTACTTGGAGTTATGGTGGTAAAGAAGTTGCCGTGGAGGGATCGTGGGATAATTGGAAAACAAGAATACCGTTGCAGAGATCAGGAAAGGACTTCACTATAATGAAGGTGTTGCCATCTGGTGTTTATCAGTTTAGATTTATCGTCGATGGAAGGTGGAGGTACTCACCTGACTTGCCTTGGACTAAAGATGATGCTGCCAATACTTACAACATTCTGGACTTACAGGATTACGTTCCTGAAGACATTGAAAGCATTTCTAGTTTCGTACCTCCTAAATCACCAGACTCTAGTTACAACAACTTACACCTAAGTTCTGAAGATTATGCAAAGGAGCCGCCATTGGTTCCTCCGTTCATGCAAATGACTCTTCTTAATGTTCCTTCGGCAAACATGGAATTCCAACCTCTCGTATCCAGACCACAGCATGTCGTGCTCAATCATCTCTACATGCAGAAAGGAAAGAGCAGCCCTTCAGTAGTTGCACTCGGGACGACTCATCGATTTGGAGCCAAATATGTCACTGTGGTGATGTACAAGTCTTTGCAGAAGTAA 906 0.4349 MGNVNGREEDFNGTVSEISSEEDGGGGEREREGGFDTVSSDCMSTPDGVVENPSPSELMGHSPPASPRTTQSPLMFSPQVPVVPLQRPDEMQVPNPSWMQTTSGYEDMFSEIGIPTMITWSYGGKEVAVEGSWDNWKTRIPLQRSGKDFTIMKVLPSGVYQFRFIVDGRWRYSPDLPWTKDDAANTYNILDLQDYVPEDIESISSFVPPKSPDSSYNNLHLSSEDYAKEPPLVPPFMQMTLLNVPSANMEFQPLVSRPQHVVLNHLYMQKGKSSPSVVALGTTHRFGAKYVTVVMYKSLQK 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g01150 301 Pfam 5'-AMP-activated protein kinase beta subunit, interaction domain 227 297 IPR006828 GO:0005515
Trre3g01150 301 MobiDBLite consensus disorder prediction 1 75 - -
Trre3g01150 301 Gene3D Immunoglobulins 109 196 IPR013783 -
Trre3g01150 301 CDD E_set_AMPKbeta_like_N 115 191 - -
Trre3g01150 301 PANTHER SNF1-RELATED PROTEIN KINASE REGULATORY SUBUNIT BETA-1 1 300 IPR043554 -
Trre3g01150 301 Pfam Glycogen recognition site of AMP-activated protein kinase 114 193 IPR032640 -
Trre3g01150 301 MobiDBLite consensus disorder prediction 22 36 - -
Trre3g01150 301 Gene3D - 202 299 - -
Trre3g01150 301 SUPERFAMILY AMPKBI-like 196 298 IPR037256 -
Trre3g01150 301 SMART AMPKBI_2 209 299 IPR006828 GO:0005515
Trre3g01150 301 SUPERFAMILY E set domains 114 199 IPR014756 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g01150 Trre-Chr3 8333429 8336055 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g01150 124 194 Protein tyrosine phosphatase (PTP) family AT3G01510 35.616 7.16e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g01150 K07199 - gmx:100777497 481.87