Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g01134 ATGACTTCATTAGCTACTAAAAACCTATGGATTAGGAAGCAACAATGTCCTTGTGGAGATTGGAAATGTTACATTACATATGAGAGTGATTCTGAGGAGGGTTCGGTAGCACCGGAATCGGTGAAAGAAGATAAAATATCATCTTGTAGAGCTATGATTATTACCCCTTATGTTGGAATGGTGTTTAAGAGTGATGATGAAGCTTTTGAACATTATGGTAATTTTGCTAGGAAAAATGGTTTTTCTATTAGGAAGGAAAGATCTAGAATTAGTCCTCAGTTAGGCGTTTATAAGCGTGATTTTGTTTGTTACCGATCAGGGTTTGCACCGGTGAAGAGGAAGGTTAATGGTGAACATCAGAGAGATAGGAAATCGGTGAGGTGCGGATGTGATGCTAAAATGTATCTATCTAAGGAAGTTGTTGATGGTGTTTCGCAATGGTTTGTGGTGCAGTTTAGTAATATACATAATCACGAACTTTTGGAAGATGATCAAGTTCGTCTTTTACCTGCGTATAGGAAAATTCACGAGGCTGATCAAGAGCGTATATTGTTGCTTTCGAAAGCCGGGTTTCCGATACATCGCATAGTGAAAATGCTTGAAGTTGAAAAGGGGATTCAAGGTGGACATTTGCCTTTCTTGGAAAGGGATGTGAGGAACTTTGTCCAAAACCGTAAGAAGATTGTTCAAGAGAATGAGGCGTTGCTAACTGAGAAAAGAGAAAATGATGTATTGGAACTTCTTGAGGTGTGCAAAGCAATGAAAGAAGCTGATGTTGAGTTTGTTTATGATTTTACGGTCGATGAGAATGAGAAGGTTGAAAATATAGCTTGGTCATATGGTGATTCTGTTAATGCGAATGCTATGTTTGGTGATGTAATTTATTTTGACACTTCTCATCGATCGATCACTTATGGATTGCTTTTTGGAGTGTGGTTTGGTATTGATAACTGTGGTAGAACCATTTTTTTCGGCTGTGTTTTATTGCAGGATGAAACACCACAATCCTTCGCATGGGCGTTACAGACATATCTCCGGTTCATGAGAGGCAGATGTCCACAAACAATTCTATCTGATCTTGATCCTGGTCTTAGAGACGCCGTCGGAAGCGAATTTCCAGGAACTAAACATGTCATTCCAGTGTGGAATATTATAAACAAGGTATCCAGTTGGTTTTCTCTTCATCTTGGGTCTCGTTATGGAGAATTTAAATCCGAGTTTAATGCCTTATTTAACATTGAGAATACTGAGGAATTTGAACTTCAGTGGAGCCAAATGATTTCTGTTTTTGAACTTGATTCAGATAAACATATTGATTTACTCTATTCTGTTCGAGCCTCCTGGGCACAACCTTATGTGAGAGGTTATTTTTTGGCTCGAATGGCAACAACTGCTTATTCCAAGTCTATAGATGCATTTTTGAAAGAAATCTTCACTCAACATACATGTTTGCGTAGCTTTTTTGAACAGGTTGGCATTTCTGCAAATTTCCAACGTCAGCCACATCAAGAGACTCAATTTACAAATCTTAGAACTTGCATACCAATTGAAGAGCATGCACGGAGCATTCTCACACCTTATGCTTTCAATGCTTTGCAACAAGAGTTATCGCTGGCAATGCAATATGCTACATCTGAAATGGCCAATGGATCATATATTATACGACACTTCAAAAGGTTGGATGGAGAGTGGCTCGTGTTCTGGCTACCAGAAGACGAACAGATACACTGCTCTTGCAAGGAATTTGAATCGTCGGGAATATTATGCAGACATGCTCTTCACATACTTGTTATAAAGAATTACTTTCAGCTTCCTGACAAATACTATTTAAGTAGATGGCGCCGGGAATGTTCTTTACTTGTCGAGGATGAGCATAACAACCAAAGTATTATTGGTGGGGAATGGTTTCAAGAATATCAATCTATAGCTGAAACTTTGTTTTCAGAATCATCAATTACAAAGGAGCGATCTGACTTTGTTCGCAGAGAACTGACAAAAGAACTTAATAGGATTCTTAATGAGGTTAGAAATCTGCCTGAGACTGATGAAGTCTGCAACATGAATGTGACGGTTTCGCCAAATAGCTAG 2088 0.387 MTSLATKNLWIRKQQCPCGDWKCYITYESDSEEGSVAPESVKEDKISSCRAMIITPYVGMVFKSDDEAFEHYGNFARKNGFSIRKERSRISPQLGVYKRDFVCYRSGFAPVKRKVNGEHQRDRKSVRCGCDAKMYLSKEVVDGVSQWFVVQFSNIHNHELLEDDQVRLLPAYRKIHEADQERILLLSKAGFPIHRIVKMLEVEKGIQGGHLPFLERDVRNFVQNRKKIVQENEALLTEKRENDVLELLEVCKAMKEADVEFVYDFTVDENEKVENIAWSYGDSVNANAMFGDVIYFDTSHRSITYGLLFGVWFGIDNCGRTIFFGCVLLQDETPQSFAWALQTYLRFMRGRCPQTILSDLDPGLRDAVGSEFPGTKHVIPVWNIINKVSSWFSLHLGSRYGEFKSEFNALFNIENTEEFELQWSQMISVFELDSDKHIDLLYSVRASWAQPYVRGYFLARMATTAYSKSIDAFLKEIFTQHTCLRSFFEQVGISANFQRQPHQETQFTNLRTCIPIEEHARSILTPYAFNALQQELSLAMQYATSEMANGSYIIRHFKRLDGEWLVFWLPEDEQIHCSCKEFESSGILCRHALHILVIKNYFQLPDKYYLSRWRRECSLLVEDEHNNQSIIGGEWFQEYQSIAETLFSESSITKERSDFVRRELTKELNRILNEVRNLPETDEVCNMNVTVSPNS 695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g01134 695 Pfam SWIM zinc finger 566 593 IPR007527 GO:0008270
Trre3g01134 695 SMART 26again6 575 602 IPR006564 GO:0008270
Trre3g01134 695 ProSiteProfiles Zinc finger SWIM-type profile. 567 600 IPR007527 GO:0008270
Trre3g01134 695 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 44 664 IPR031052 GO:0006355
Trre3g01134 695 Pfam FAR1 DNA-binding domain 71 161 IPR004330 -
Trre3g01134 695 Pfam MULE transposase domain 293 386 IPR018289 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g01134 Trre-Chr3 8265056 8268015 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Trre3g01134 MULE 3.9e-13 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g01134 - - gmx:100817107 1211.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre3g01134 3 8265056 8268015 Trre3g01134 3 8265056 8268015 ECH