Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g01118 ATGGGAACTTGTCAACAACAACCAAATTCAGCTTGTATTAATTCATCATCTAATGGTAGTAGCAATCAAGGAACCAATGTTTCTTTTGAAACAAGCAACATTGAGAAGCAATTCTATACCTTGGAATCATCTCAAGTAACCACTGATTTCACAGCTTTTGATTCTCCTTCATCTGATAGTGTTAATTCATTCAACAACAGATGTTCTTTTTGTCCACAACTTTCTCATCATTACTCTTCTGACAATAACATGAACGGATCGCCGATAAGTGTTTACTCTAGCGCGGATAACGATAGCTTTGAATTGAAGCAAAAACTTAAAGAATTGGAGATTTCATTGTTAGGCCTCGAGTCAGATACCGTCGATAGCTGCCAGTCCTTCTCAAACGGTAGCCGTCACCAAGGTGTGTCTCAACATAATTGGTCTAAGATTGTAGAAATGATTCCAAAGCTAGACTTGAAAGAAGTTCTTATTACATGTGCAAAAGCTGTTTCTGATGGTGATATTGAAACAGCATCAGGATACATGAACAATGTGTTAGGAAAAATGGTATCGGTCAGCGGTGTTCCGATTGAGAGGTTAGCTGCTTACATGTTGGAAGGTTTAAGAGCAAGGTTGGAATCATCAGGGAGTGTAATTTATAAAGCATTGAAATGTGACGAACCGACGAGCAACGAATTAATGAGTTATATGCAAACATTGTATCATGCTTGTCCATATTTTAAGTTTGCTTATATATCTTCCAATGTTTTCATTTGTGAAGCATTGCAAAATGAGTCAAGAATTCACATAATTGACTTCCAGATTGCACAAGGGACACAATGGTTGTCACTTTTGCAGGCTCTTACGCGTAGACCAGGCGGACCTCCGTTCGTTCGTGTAACAGGTATCGATGATTCACAATCGTTTCATGCTAGAGGTGGAGGACTTCACATTGTAGGAAAAAATCTAGCAGATTATGCGAAAACTTGTGGAGTTCCATTTGAGTTTCATAGTGTTGCAATGTTTGGAAGTTATGTTCAACTGGAAGATCTTGTAGTTCAAAATGGTGAAGCTATTGCTGTGAACTTTCCTTTTGTTTTGCATCACATGCCGGATGAGAGCGTGAGCACGGAGAATCATAGAGACCGGCTTTTGAGATTGGTGAGGAGTTTGTCACCTAAGGTTGTGTTACTTGTGGAGCAAGAATCCAACACAAACACTTCTCCATTTTTTCAAAGGTTTGTTGAGACTTTGGATTATTATACTGCTATGTTTGAATCAATTGATGTGGCTTTTGCTAGAGATGATAAGAGGAGGATTAATGCAGAACAACATTGCGTGGCTCGCGATATTGTTAACATTATAGCTTGTGAAGGAGATGAGAGGATTGAAAGACATGAACTTTTTGGAAAGTGGAGGGCAAGATTTTCAATGGCGGGTTTTGTACCGTTACCGTTGAGTCGCTCGGTAATTGATTCAATTAGAAATCTCTTAAAACATTTCAATGAAAATTATAGGATTGAAGAGACAGATGTTGCTATCTATTTAGCATGGAAGGGTAGATTTATGTGCACATCTTCTGCTTGGAGATGTTCTTGA 1581 0.3858 MGTCQQQPNSACINSSSNGSSNQGTNVSFETSNIEKQFYTLESSQVTTDFTAFDSPSSDSVNSFNNRCSFCPQLSHHYSSDNNMNGSPISVYSSADNDSFELKQKLKELEISLLGLESDTVDSCQSFSNGSRHQGVSQHNWSKIVEMIPKLDLKEVLITCAKAVSDGDIETASGYMNNVLGKMVSVSGVPIERLAAYMLEGLRARLESSGSVIYKALKCDEPTSNELMSYMQTLYHACPYFKFAYISSNVFICEALQNESRIHIIDFQIAQGTQWLSLLQALTRRPGGPPFVRVTGIDDSQSFHARGGGLHIVGKNLADYAKTCGVPFEFHSVAMFGSYVQLEDLVVQNGEAIAVNFPFVLHHMPDESVSTENHRDRLLRLVRSLSPKVVLLVEQESNTNTSPFFQRFVETLDYYTAMFESIDVAFARDDKRRINAEQHCVARDIVNIIACEGDERIERHELFGKWRARFSMAGFVPLPLSRSVIDSIRNLLKHFNENYRIEETDVAIYLAWKGRFMCTSSAWRCS 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g01118 526 Pfam GRAS domain family 153 524 IPR005202 -
Trre3g01118 526 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 104 513 IPR005202 -
Trre3g01118 526 ProSiteProfiles GRAS family profile. 144 524 IPR005202 -
Trre3g01118 526 MobiDBLite consensus disorder prediction 1 27 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g01118 Trre-Chr3 8162529 8164109 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g01118 26 524 GRAS Transcription Factor Family AT4G17230 57.228 0.0 572
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Trre3g01118 GRAS 3.2e-125 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g01118 - - gmx:100817987 723.776
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre3g01118 3 8162529 8164109 Trre3g01118 3 8162529 8164109 ECH