Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g01111 ATGGTTTCTCTTGAAGAATCTCGTTCGAATTCGAATCGTTTTCCTTTGCCACGAACCTATCAGTATCATTCCTCCAAATCGGAGCGTAACATCGGAAGATCGATGAGAACAAGAAGATCTAGTATCTTCGATGAAGATAACAGTAGTTGCACGTTTACCGAGAGATCCACGTGTGTATCGGAAAATTTAACCGATTCCGTCGTCGACCTCCGTCTCGGTGAACTTGCTTCCCGGAATAACAAATCCGGGAAATCCTCTGCAACTGAGGAGGAGTTTCTTGATTTATCGCAAGTTTTCAGTGAATATTCTGCTTGTAGTAGTGATATCTCCGGTGAACTTCAGCGTTTGGCGACGTTACCGTCGCCGGAATGTAATCTGAAGAGTGACGGTGGAGGAGACGGTGTGGTTGAAGTTGAACCGGAGCCTTGCATGGGGTTTTTGCAGAGAGAGAATTTCTCAACGGAGATTATTGAAAGTATTTCGCCGGAGGATCTTCAACCGACGGTGAAGCTTTGCATCGACGGTCTACAATCTTCTTCGGTAGCCGTGAAGCGTTCTGCAGCGGCGAAACTGAGGTTGTTAGCTAAGAATCGTGCTGATAACAGAGTTCTAATTTGTGAATCCGGTGCTGTACCTTTTCTTGTTCCTCTGCTTCGATGCAGTGATCCATGGACGCAAGAACATGCAGTAACAGCGCTTCTGAATCTTTCACTTCATGAGGATAACAAGAAGGTGATATTCAATGCCGGAGCAGTGAAATCGTTTATTTATGTGTTGAAAACAGGGACAGAAACTTCGAAACAGAACGCAGCTTGTGCACTTTTGAGCTTAGCTTTAGTAGAAGAAAACAAGAGCTCAATTGGCGCTTCTGGCGCGATTCCGCCTCTTGTTTCGCTTCTGTTAAACGGTTCAAACAGAGGGAAAAAGGATGCTTTAACGACCCTCTATAAGCTTTGTTCTGTTAAGCAGAATAAAGAGAGAGCAGTCACCGCCGGTGTGGTGAAGCCGTTGGTTGAGCTTGTTGCTGAACAAGGAAATGGGATGATGGAGAAAGCAATGGTGGTGTTGAATAGTTTAGCAGGGATTGATGAAGGAAAGGAAGCTATTGTTGAAGAAGGTGGAATAGCTGCTCTTGTTGAAGCCATTGAAGATGGGTCTGTGAAAGGAAAGGAATTTGCGGTTTTAACACTTCTTCAGCTTTGTGCTGAGAGTGTTACAAACAGAGGGTTACTTGTTAGAGAAGGTGGAATTCCTCCACTTGTAGCTCTTTCTCAGAATGGAACTCTTCGAGCTAAGCATAAGGCTGAGACGCTCCTTCGATACTTGAGAGAATCAAGACAAGAAGCATCAACTTCGACTTCTTAA 1365 0.4462 MVSLEESRSNSNRFPLPRTYQYHSSKSERNIGRSMRTRRSSIFDEDNSSCTFTERSTCVSENLTDSVVDLRLGELASRNNKSGKSSATEEEFLDLSQVFSEYSACSSDISGELQRLATLPSPECNLKSDGGGDGVVEVEPEPCMGFLQRENFSTEIIESISPEDLQPTVKLCIDGLQSSSVAVKRSAAAKLRLLAKNRADNRVLICESGAVPFLVPLLRCSDPWTQEHAVTALLNLSLHEDNKKVIFNAGAVKSFIYVLKTGTETSKQNAACALLSLALVEENKSSIGASGAIPPLVSLLLNGSNRGKKDALTTLYKLCSVKQNKERAVTAGVVKPLVELVAEQGNGMMEKAMVVLNSLAGIDEGKEAIVEEGGIAALVEAIEDGSVKGKEFAVLTLLQLCAESVTNRGLLVREGGIPPLVALSQNGTLRAKHKAETLLRYLRESRQEASTSTS 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g01111 454 SMART arm_5 362 402 IPR000225 GO:0005515
Trre3g01111 454 SMART arm_5 280 320 IPR000225 GO:0005515
Trre3g01111 454 SMART arm_5 198 238 IPR000225 GO:0005515
Trre3g01111 454 SMART arm_5 239 279 IPR000225 GO:0005515
Trre3g01111 454 SMART arm_5 404 444 IPR000225 GO:0005515
Trre3g01111 454 FunFam U-box domain-containing protein 4 308 449 - -
Trre3g01111 454 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 209 251 IPR000225 GO:0005515
Trre3g01111 454 Gene3D - 150 308 IPR011989 -
Trre3g01111 454 Gene3D - 309 450 IPR011989 -
Trre3g01111 454 Pfam Armadillo/beta-catenin-like repeat 282 320 IPR000225 GO:0005515
Trre3g01111 454 Pfam Armadillo/beta-catenin-like repeat 200 237 IPR000225 GO:0005515
Trre3g01111 454 FunFam U-box domain-containing protein 4 155 307 - -
Trre3g01111 454 PANTHER U BOX DOMAIN-CONTAINING 124 443 - -
Trre3g01111 454 SUPERFAMILY ARM repeat 166 443 IPR016024 -
Trre3g01111 454 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 332 374 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g01111 Trre-Chr3 8110011 8111905 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g01111 32 447 U-box Gene Family AT2G23140 40.230 8.04e-83 266
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g01111 - - tpra:123898555 831.247