Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g01067 ATGGCCACTTTAATCAATTTTATTATTCTCCTCTTATTTGTCATCACATTGTGTTTTATTCTACCTACCTCAGCTAATTCAGATTCAAAAAAAGTTCATAACAATGACCTATTAGATAATATTCCAACACCAAGCTACAACAACATCCCCAATAGTAACACACCACAAAATGTTGATATTATGAACACAATTGATTCATGTTGGCGAAAAAATTCAAATTGGGCATCAAATCGTCAATCATTAGCGGATTGCGCAATCGGGTTTGGTAAAAACGCGATTGGTGGAAAATACGGTGAAATATATGAAGTAACCGATCCTTCTGACGACCCAATAAACCCAAAACAAGGTACACTACGTTACGGCGCAATCCAAACGGAACCACTTTGGATAACATTTGCAAATGACATGTTTATTAAGCTAAAAAATGAGCTTATTGTAAATAGTTACAAAACAATTGATGGTAGAGGTGTTAAAGTTGAAATTGGAAATGGACCTTGTATTACAATACAAGGTGTGAGTCATGTGATTGTGCATGGAATTAGTATTCATGATTGTAAACCGGGTGAGGCTGGTTTAGTTAGAAGTAGTAATGAACATGTTGGTTTTCGTGAAGGGTGTGATGGTGATGGTATTAGTGTTTTTGCTTCTTCTAATGTTTGGATTGATCATTGCTTTTTGGCAAGATGTGCTGATGGTCTTACTGATGTTACTCATGCTTCAACTCTTGTCACTATCTCAAATAGTTACTTCACCCAACATGACAAAGTTATGCTGCTAGGACATAACGATGATTACAGTGCTGATAGAGTAATGAAAGTAACAGTTGCTTTCAACTACTTTGCCAGTGGCCTAATAGAAAGAATGCCAAGGGTAAGATTTGGCTATGCCCATGTTGTAAACAACCGATATGATGAGTGGCTCATGTATGCCATTGGTGGTAGTGCTGACCCTACCATTTTCAGTCAAGGAAATTACTTTATGGCTTCAAAAAATTCTGATGCAAAACAGGTTACAAAGAGAGAAACTGATGGAAAATGGAATAGTTGGAAATGGAGGACTTATGGGGATGAATTCTTAAATGGTGCTTATTTTGTGCCATCTGGATATGGAAGTTGTGCACCATTATATTCACCTGATCAAAACTTTGTTGCTGCTAAGGCTTCCATGGTGCCTTTATTAACACTCAATGCAGGACCTCTTGATTGTATTGCTAACAAAGCATGTTAA 1227 0.3692 MATLINFIILLLFVITLCFILPTSANSDSKKVHNNDLLDNIPTPSYNNIPNSNTPQNVDIMNTIDSCWRKNSNWASNRQSLADCAIGFGKNAIGGKYGEIYEVTDPSDDPINPKQGTLRYGAIQTEPLWITFANDMFIKLKNELIVNSYKTIDGRGVKVEIGNGPCITIQGVSHVIVHGISIHDCKPGEAGLVRSSNEHVGFREGCDGDGISVFASSNVWIDHCFLARCADGLTDVTHASTLVTISNSYFTQHDKVMLLGHNDDYSADRVMKVTVAFNYFASGLIERMPRVRFGYAHVVNNRYDEWLMYAIGGSADPTIFSQGNYFMASKNSDAKQVTKRETDGKWNSWKWRTYGDEFLNGAYFVPSGYGSCAPLYSPDQNFVAAKASMVPLLTLNAGPLDCIANKAC 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g01067 408 Pfam Pectate lyase 141 326 IPR002022 -
Trre3g01067 408 SMART amb_all 135 332 IPR002022 -
Trre3g01067 408 Gene3D - 61 401 IPR012334 -
Trre3g01067 408 SUPERFAMILY Pectin lyase-like 82 406 IPR011050 -
Trre3g01067 408 PANTHER PECTATE LYASE 18-RELATED 54 406 IPR045032 GO:0030570
Trre3g01067 408 PRINTS Pollen allergen Amb family signature 84 101 IPR018082 -
Trre3g01067 408 PRINTS Pollen allergen Amb family signature 107 132 IPR018082 -
Trre3g01067 408 PRINTS Pollen allergen Amb family signature 349 373 IPR018082 -
Trre3g01067 408 PRINTS Pollen allergen Amb family signature 143 159 IPR018082 -
Trre3g01067 408 PRINTS Pollen allergen Amb family signature 287 306 IPR018082 -
Trre3g01067 408 PRINTS Pollen allergen Amb family signature 379 402 IPR018082 -
Trre3g01067 408 PRINTS Pollen allergen Amb family signature 207 228 IPR018082 -
Trre3g01067 408 PRINTS Pollen allergen Amb family signature 309 328 IPR018082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g01067 Trre-Chr3 7667205 7669853 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g01067 62 408 Polysaccharide Lyase AT1G11920 69.540 0.0 522
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g01067 K01728 - gmx:100803229 630.557