Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g01065 ATGTTTGACCATGTCTGCCATCACTCCTCCCACCACCTTCACTACCCCAACAACTACTATCAACACCCCAACCATCACCATGCACATCGACAACAACCAAAACGCCAATCAAGAAAAAGAAAAAATAAAAAACATTATGGACGAAAACCCATTAAAGGGTCACCATATTTAAGGAGCTACTACAAATGTAGCAGTTTCAAAGATTGTACAGTTAGAAAACAAGTTGAAAAAAGTGAAACTGAAGAGAACACTTATGTTGTAACATATCGAGGAAAGCACAACCACTCAAAACCAGAAGTTAAACAAAACTCTGATAATGGGACCTCTCAAAACAAGTCATCGGAGGCTAGATTACCCATTGTCGGACAAACTGGATCATCCCAAAACTCTGAAAACTTGGGTTATCCTAATGTGGTGATGGTGCAGTTTGATCAATCGGAGAATAACAACGCTCAAGTTATCGACGGTCATTCAAAAATCACTAATCCGGAAATTGAACTTAATGAGAGTCAATCACATGTTGTCAGCGAAGCTGGATCGTCGCAAAATGTTCAAAAATCAGATTCACATAACATGACGATGTTACAACATGTTAGAAATCCCTTATTCTAA 612 0.3856 MFDHVCHHSSHHLHYPNNYYQHPNHHHAHRQQPKRQSRKRKNKKHYGRKPIKGSPYLRSYYKCSSFKDCTVRKQVEKSETEENTYVVTYRGKHNHSKPEVKQNSDNGTSQNKSSEARLPIVGQTGSSQNSENLGYPNVVMVQFDQSENNNAQVIDGHSKITNPEIELNESQSHVVSEAGSSQNVQKSDSHNMTMLQHVRNPLF 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g01065 203 MobiDBLite consensus disorder prediction 86 115 - -
Trre3g01065 203 SUPERFAMILY WRKY DNA-binding domain 44 98 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre3g01065 203 Gene3D WRKY domain 23 99 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre3g01065 203 Pfam WRKY DNA -binding domain 44 95 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre3g01065 203 SMART WRKY_cls 46 97 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre3g01065 203 MobiDBLite consensus disorder prediction 14 54 - -
Trre3g01065 203 ProSiteProfiles WRKY domain profile. 44 98 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre3g01065 203 MobiDBLite consensus disorder prediction 101 115 - -
Trre3g01065 203 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 46 177 IPR044810 GO:0003700
Trre3g01065 203 MobiDBLite consensus disorder prediction 86 100 - -
Trre3g01065 203 MobiDBLite consensus disorder prediction 23 51 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g01065 Trre-Chr3 7656785 7657767 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g01065 44 113 WRKY Transcription Factor Family AT5G52830 54.286 2.02e-19 82.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Trre3g01065 WRKY 4.5e-17 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g01065 - K13426 tpra:123896298 232.646