Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g01056 ATGGAAAATGATTGGGATCTATCTTCTATTGTGCGTCGCTGGAAAGTTACCACCTTTACTAATCCTTCTGCCATTTGTGAAACTCCACCTCAAAACCTAGCCACCATGGTCACCACCACAACCACAAATAGCCTTGTATTCCCTATAAATGTCACACCATCTTGTTTTGTTGATTTTACTTCTAACCAAGAAAATAGTTCAGGTTCTTTTATCTCACATAAACCAAATGACTTCACAGATCTGAACAAATTGAGGGTCAATTTCAATTCTAACACCCATATCCCCACCCCCACTACTATCAGCACCCCAACCATCACCCATGCACATCGACAACAACCAAAATGCCAATCAAGAAAAAGAAAAAATAAAAATCATGTGACATCGGCGTGCCATGTGAAGGAGGATAAACTTTCAGAAGATAAGTGGGGATGGAAAAAGTATGGACGAAAACCCATTAAAGGGTCACCACATTTAAGGAGCTACTACAAATGTAGCAGTTTCAAAGATTGTCCAGCTAGAAAACAAGTTGAAAAAAGTGAAACTGAAGAGAACACTTATGTTGTAACATATCGAGGAAATCACAATCACCCAAAACCAGAAGTTAAACAAAACTCTGATAATGGGACCTCTCAAAACAAGTCATCAGAGGCTAGATTACCCATTGTCAGACAAGTTGGATCATCCCAAAACTTCGAAAACTTGGGTTATCCTAATGTGGTGATGGTGCAATTTGATCAATCGGAGAGTAACAACGCTCAAGTTATCGACGGTCATTCAAAAATCACTAATCCAGAAATCGAACTTAATGAGAGTCAATCACATATTGTCAGGAAAGCTGGATCGTCCCAAAATGTTAAAAAATTCGATTCACGTAACAAAATGTCACAACAAGATGAGCCGGAGAGAAGAAATGCTCAGATTTTTTTTGGTGAATTAAAAATCCCTTATTCCGAAACAGATTTTATTGAAAGCTCTAATAACGATGACGACATTTTGATACCAAATATGTCAGCTATGGTGGAAGATTTCCTACCGGACATCAATTTCCTCAATGGCGGTTCTATAATGGTTTGA 1074 0.3827 MENDWDLSSIVRRWKVTTFTNPSAICETPPQNLATMVTTTTTNSLVFPINVTPSCFVDFTSNQENSSGSFISHKPNDFTDLNKLRVNFNSNTHIPTPTTISTPTITHAHRQQPKCQSRKRKNKNHVTSACHVKEDKLSEDKWGWKKYGRKPIKGSPHLRSYYKCSSFKDCPARKQVEKSETEENTYVVTYRGNHNHPKPEVKQNSDNGTSQNKSSEARLPIVRQVGSSQNFENLGYPNVVMVQFDQSESNNAQVIDGHSKITNPEIELNESQSHIVRKAGSSQNVKKFDSRNKMSQQDEPERRNAQIFFGELKIPYSETDFIESSNNDDDILIPNMSAMVEDFLPDINFLNGGSIMV 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g01056 357 SMART WRKY_cls 138 198 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre3g01056 357 MobiDBLite consensus disorder prediction 280 301 - -
Trre3g01056 357 MobiDBLite consensus disorder prediction 202 218 - -
Trre3g01056 357 SUPERFAMILY WRKY DNA-binding domain 134 199 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre3g01056 357 Gene3D WRKY domain 123 200 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre3g01056 357 ProSiteProfiles WRKY domain profile. 133 199 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre3g01056 357 MobiDBLite consensus disorder prediction 190 218 - -
Trre3g01056 357 Pfam WRKY DNA -binding domain 139 197 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre3g01056 357 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 80 336 IPR044810 GO:0003700
Trre3g01056 357 MobiDBLite consensus disorder prediction 112 126 - -
Trre3g01056 357 MobiDBLite consensus disorder prediction 92 127 - -
Trre3g01056 357 MobiDBLite consensus disorder prediction 92 111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g01056 Trre-Chr3 7628189 7629555 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g01056 116 214 WRKY Transcription Factor Family AT5G52830 55.556 4.51e-30 116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Trre3g01056 WRKY 3e-22 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g01056 - K13425 tpra:123896298 376.711