Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g01055 ATGGAAAATGATTGGGACCTCACTTCTGTTGTGCGTAGCTGCAAAGCTACCACCTTTACTAATTCTTCCACATTTGGTGAAACTTCACCTCAAAACCTATCCACCACAAATAGTATTACATCCCCTATAAACACACCATCTTGCTTTGAAGATTTTATTTTTAATCAAGAAAATAGCCCAATTGCATATACACACACAATGAAAAATAATTGGGATCTATCTTCTATTGTCTGTCGCTGTAAATTTACCTCCTTTACTAATCTTTCCACTTTTTGTGAAACTCCACCTCAAAATCTAACCACCATCAATAGTATTATATCCCCTATAAACACCTCACCATCTTGCTTTGAAGATTTTATTTTTAACCAAGAAAGTAGCCTGATTGCAAATACACACACAATGGAAAATGATTGGGATCTATCTTCTATTGTGCGTCGCTGGAAAGTTACCACCTTTACTAATCCTTCTGCCATTTGTGAAACTCCACCTCAAAACCTAGCCACCATGGTCACCACCACAACCACAAATAGCCTTGTATTCCCTATAAATGTCACACCATCTTGTTTTGTTGATTTTACTTCTAACCAAGAAAATAGTTCAGGTTCTTTTATCTCACATAAACCAAATGACTTCACAGATCTGAACAAATTGAGGGTCAATTTCAATTCTAACACCCATATCCCCACCCCCACTACTATCAGCACCCCAACCATCACCCATGCACATCGACAACAACCAAAATGCCAATCAAGAAAAAGAAAAAATAAAAATCATGTGACATCGGCGTGCCATGTGAAGGAGGATAAACTTTCAGAAGATAAGTGGGGATGGAAAAAGTATGGACGAAAACCCATTAAAGGGTCACCACATTTAAGGAGCTACTACAAATGTAGCAGTTTCAAAGATTGTCCAGCTAGAAAACAAGTTGAAAAAAGTGAAACTGAAGAGAACACTTATGTTGTAACATATCGAGGAAATCACAATCACCCAAAACCAGAAGTTAAACAAAACTCTGATAATGGGACCTCTCAAAACAAGTCATCAGAGGCTAGATTACCCATTGTCAGACAAGTTGGATCATCCCAAAACTTCGAAAACTTGGGTTATCCTAATGTGGTGATGGTGCAATTTGATCAATCGGAGAGTAACAACGCTCAAGTTATCGACGGTCATTCAAAAATCACTAATCCAGAAATCGAACTTAATGAGAGTCAATCACATATTGTCAGGAAAGCTGGATCGTCCCAAAATGTTAAAAAATTCGATTCACGTAACAAAATGTCACAACAAGATGAGCCGGAGAGAAGAAATGCTCAGATTTTTTTTGGTGAATTAAAAATCCCTTATTCCGAAACAGATTTTATTGAAAGCTCTAATAACGATGACGACATTTTGATACCAAATATGTCAGCTATGGTGGAAGATTTCCTACCGGACATCAATTTCCTCAATGGCGGTTCTATAATGGTTTGA 1473 0.3741 MENDWDLTSVVRSCKATTFTNSSTFGETSPQNLSTTNSITSPINTPSCFEDFIFNQENSPIAYTHTMKNNWDLSSIVCRCKFTSFTNLSTFCETPPQNLTTINSIISPINTSPSCFEDFIFNQESSLIANTHTMENDWDLSSIVRRWKVTTFTNPSAICETPPQNLATMVTTTTTNSLVFPINVTPSCFVDFTSNQENSSGSFISHKPNDFTDLNKLRVNFNSNTHIPTPTTISTPTITHAHRQQPKCQSRKRKNKNHVTSACHVKEDKLSEDKWGWKKYGRKPIKGSPHLRSYYKCSSFKDCPARKQVEKSETEENTYVVTYRGNHNHPKPEVKQNSDNGTSQNKSSEARLPIVRQVGSSQNFENLGYPNVVMVQFDQSESNNAQVIDGHSKITNPEIELNESQSHIVRKAGSSQNVKKFDSRNKMSQQDEPERRNAQIFFGELKIPYSETDFIESSNNDDDILIPNMSAMVEDFLPDINFLNGGSIMV 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g01055 490 SUPERFAMILY WRKY DNA-binding domain 267 332 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre3g01055 490 Gene3D WRKY domain 256 333 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre3g01055 490 MobiDBLite consensus disorder prediction 413 434 - -
Trre3g01055 490 ProSiteProfiles WRKY domain profile. 266 332 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre3g01055 490 MobiDBLite consensus disorder prediction 335 351 - -
Trre3g01055 490 MobiDBLite consensus disorder prediction 323 351 - -
Trre3g01055 490 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 4 469 IPR044810 GO:0003700
Trre3g01055 490 SMART WRKY_cls 271 331 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre3g01055 490 MobiDBLite consensus disorder prediction 225 260 - -
Trre3g01055 490 MobiDBLite consensus disorder prediction 225 244 - -
Trre3g01055 490 MobiDBLite consensus disorder prediction 245 259 - -
Trre3g01055 490 Pfam WRKY DNA -binding domain 272 330 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g01055 Trre-Chr3 7627790 7629555 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g01055 249 347 WRKY Transcription Factor Family AT5G52830 55.556 2.94e-29 116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Trre3g01055 WRKY 4.8e-22 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g01055 - K13425 tpra:123896298 517.694