Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g01052 ATGGAAAATGATTGGGACCTCACTTCTATTGTGCGTAGCTGCAAAGCTACTACCTTTACTAATTCTTCCACATTTGGTGAAACTTCACCTCAAAACCTATCCACCACCAATAGTATTACATCCCCTATAAACGCCACACCATCTTGCTTTGAAGATTTTATTTTTAATCAAGAAAATAGCCCAATTGCATATACACACACAATGAAAAATAATTGGGATCTATCTTCTATTGTATGTCGCTGCAAAGTTACCTCCTTTACTAATCCTTCCACCTTTTGTGAAACTCCACCTCAAAATCTAACCACCATCAATAGTATTATATCCCCTATAAACACCTCACCATCTTGCTTTGAAGATTTTATTTTTAACCAAGAAAGTAGCCTGATTGCAAATACACACACATTGGAAAATGATTGGGATCTATTTTCTATTGTGCGTCGCTGGAAAGTTACCACCTTTACTAATCCTCCCACCATTTGTGAAACTCCACCTCAAAACCTAGCCACCATGGTCACCACCACAACCACAAATAGCCTTGTATTCCCTATAAATGTCACACCATCTTGTTTTGTTGATTTTACTTCTAACCAAGAAAATAGTTCAGGTTCTTTTATCTCACATAAACCAAATGACTTCACAGATCTGAACAAATTGAGGATCAATTTCAATTCTAACACCCATATCCCCACCCCCACTACTATCAGCACCCCAACCATCACCCATGCACATCGACAACAACCAAAACGCCAATCAAGAAAAAGAAAAAATAAAAATAATGTGACATCGGTGTGCCATGTGAAGGAGGATAAACTTTCAGAAGATAAGTGGCGATGGAAAAAGTATGGACGAAACCCCATTAAAGGGTCACCACATTTAAGGAGCTACTACAAATGTAGCAGTTTCAAAGATTGTCCAGCTAGAAAACAAGTTGAAAAAAGTGAAACTGAAGAGAACACTTATGTTGTAACATATCGAGGAAAGCACAATCACCCAAAACCAGAAGTTAAACAAAACTCTGATAATGGGACCTCTCAAAACAAGTCATCAAAGGCTAGATTACCCATTGTCGGACAAGCTGAATCATCCCAAAACTTCGAAAACTTGGGTTATCCTAATGTGGTGATGATACCAAATATGTCAGCTATGGTGGAAGATTTCCTACCGGACATCAATTTCCTCAATGGCGGTTCTATAATGGTTTGA 1203 0.3815 MENDWDLTSIVRSCKATTFTNSSTFGETSPQNLSTTNSITSPINATPSCFEDFIFNQENSPIAYTHTMKNNWDLSSIVCRCKVTSFTNPSTFCETPPQNLTTINSIISPINTSPSCFEDFIFNQESSLIANTHTLENDWDLFSIVRRWKVTTFTNPPTICETPPQNLATMVTTTTTNSLVFPINVTPSCFVDFTSNQENSSGSFISHKPNDFTDLNKLRINFNSNTHIPTPTTISTPTITHAHRQQPKRQSRKRKNKNNVTSVCHVKEDKLSEDKWRWKKYGRNPIKGSPHLRSYYKCSSFKDCPARKQVEKSETEENTYVVTYRGKHNHPKPEVKQNSDNGTSQNKSSKARLPIVGQAESSQNFENLGYPNVVMIPNMSAMVEDFLPDINFLNGGSIMV 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g01052 400 ProSiteProfiles WRKY domain profile. 267 333 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre3g01052 400 Gene3D WRKY domain 256 334 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre3g01052 400 MobiDBLite consensus disorder prediction 226 263 - -
Trre3g01052 400 Pfam WRKY DNA -binding domain 273 331 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre3g01052 400 MobiDBLite consensus disorder prediction 226 244 - -
Trre3g01052 400 MobiDBLite consensus disorder prediction 245 260 - -
Trre3g01052 400 MobiDBLite consensus disorder prediction 323 351 - -
Trre3g01052 400 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 4 360 IPR044810 GO:0003700
Trre3g01052 400 SMART WRKY_cls 272 332 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre3g01052 400 MobiDBLite consensus disorder prediction 336 351 - -
Trre3g01052 400 SUPERFAMILY WRKY DNA-binding domain 266 333 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g01052 Trre-Chr3 7621547 7623315 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g01052 250 348 WRKY Transcription Factor Family AT5G52830 54.545 3.57e-29 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Trre3g01052 WRKY 1.1e-21 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g01052 - K13425 tpra:123896298 375.941