Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g01045 ATGCAGCCAAATGAGTTTACTGAAAAATATAGTTTTATAACCAAATTCAATCACACCACCTCTATCCCCACATTTGCAACTGCTCCCACCACAACCAACCACACTACCATTAATCCGATCACCACTGCCACCACCTTCACTAACCCAACAATCACTATCAGAACCCATACCACCACCCCTGCAACACATCTGCCACAACAAAAACCCCATTCAAGAATTAGAAAAAATAAAAATCTTGTGACATCAATGTACTATGTGAAGGAGGAAAATCTTTCAAAAGATCTGTGGCAATGGAGAAAGTATGGACGAAAATCCATCAAAGGGTCACCACATTCAAGGAACTACTACAAATGCAGCAGTTGCAATCATTGTCCAGCTAGAAAACATGTTGAAAAAAGCGACGCTGGTGAGAAGACTTATGTTGTAACGTATCTAGGAAAGCATAACCACCCAGCACCAGAAGTTATGCAAAACTCCGATAATGGTACCTCTCAGCACAAGTCATCAGAGGCTAGATCACCCGTTGTCGGACATGCTGGATCATCCCAAAACTTCGAAAGCTTGGAGAGTAACAATGCTCAAGTTTTCAACGGTCATTCAAAAACCACTAATTCGAAAACTAAACTTGTAGAGAGTCAATCACATGTTATCGGAGAAGCTGGACCGTCCCATAATGTGCAAAAAATAGACCCACATATCAGGATGATGTTACAACGTGATGAGCAGACCGAGAGAAGCAATGCTCATATTTTTCCTGGTGAATTAGAAGTCTCTTCTGAAACAAATTTTATTGAAAGCTTTGATGACGATGATGATATTTTGATATCAAACATATCAAATTTGTCGGAAGATTTCTTCCTGGACTTCGATCACCTCAACGACGATTCTATATTACCTTAG 900 0.4011 MQPNEFTEKYSFITKFNHTTSIPTFATAPTTTNHTTINPITTATTFTNPTITIRTHTTTPATHLPQQKPHSRIRKNKNLVTSMYYVKEENLSKDLWQWRKYGRKSIKGSPHSRNYYKCSSCNHCPARKHVEKSDAGEKTYVVTYLGKHNHPAPEVMQNSDNGTSQHKSSEARSPVVGHAGSSQNFESLESNNAQVFNGHSKTTNSKTKLVESQSHVIGEAGPSHNVQKIDPHIRMMLQRDEQTERSNAHIFPGELEVSSETNFIESFDDDDDILISNISNLSEDFFLDFDHLNDDSILP 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g01045 299 SUPERFAMILY WRKY DNA-binding domain 85 153 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre3g01045 299 MobiDBLite consensus disorder prediction 149 183 - -
Trre3g01045 299 ProSiteProfiles WRKY domain profile. 87 153 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre3g01045 299 SMART WRKY_cls 92 152 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre3g01045 299 Pfam WRKY DNA -binding domain 93 151 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre3g01045 299 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 55 286 IPR044810 GO:0003700
Trre3g01045 299 Gene3D WRKY domain 62 154 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre3g01045 299 MobiDBLite consensus disorder prediction 154 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g01045 Trre-Chr3 7591355 7592465 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g01045 70 168 WRKY Transcription Factor Family AT5G52830 52.525 1.45e-26 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Trre3g01045 WRKY 1.1e-20 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g01045 - K13425 tpra:123896298 278.87