Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g01044 ATGGAAAATGATTGGGACCTCACTTCTATTGTTCGTAGCTGCAAAGCTACCACCTTTACAAATCCATCAATCTTTTCTGAAACTCCACCTCAAAACCTAACACCCACCACCACCACCACCACCACCTCCACCTCCACCTCCACCTGTAGTATTATATCCCCTATAAACACCACACCGTCTTGCTTAGAAGATTTCATTTTTAACCAAGAAAATAGCTCAGTTGCAAATACAGACACAATGCAAAATGATTGGGATCTATCTTCTGTTGTGCGTAGCTGCAAAGTTACCACCTTTACTAGTCCTTCCATGTTTTGTGAAACTCCGGCTCAAAACCTAACCACCATGGTCACCACCACGACCACAAATAGCCCTGGATCCCTTATAAACACCCCACCATCATGTTTTCCTGATTTTACTTTTAACCAAGAAAATAGTCCAGTTTCTTTTACCTCACATAAACTAAATGACTTGGCAGATCTGAACAAATTGAGGGTCAATTTCAATTCCACCACTCATATCCCCACACCCACTACCGCTAGTATCCCAATCTCTGTTACCAACACAACCTCTTCTCTCACCACCACCACCACCACTTTCTCCACCCACACCACCCCAAATATCATCACAAACATTAACACTAACGTTCATGTATCCAATCAAAATTCAACCTTTTTTAATTTTTCAACACCCATTGAACAAAATCAAATGCAGCCAAATGAGTTTACTGAAAAATATAGTTTTATAACCAAATTCAATCACACCACCTCTATCCCCACATTTGCAACTGCTCCCACCACAACCAACCACACTACCATTAATCCGATCACCACTGCCACCACCTTCACTAACCCAACAATCACTATCAGAACCCATACCACCACCCCTGCAACACATCTGCCACAACAAAAACCCCATTCAAGAATTAGAAAAAATAAAAATCTTGTGACATCAATGTACTATGTGAAGGAGGAAAATCTTTCAAAAGATCTGTGGCAATGGAGAAAGTATGGACGAAAATCCATCAAAGGGTCACCACATTCAAGGAACTACTACAAATGCAGCAGTTGCAATCATTGTCCAGCTAGAAAACATGTTGAAAAAAGCGACGCTGGTGAGAAGACTTATGTTGTAACGTATCTAGGAAAGCATAACCACCCAGCACCAGAAGTTATGCAAAACTCCGATAATGGTACCTCTCAGCACAAGTCATCAGAGGCTAGATCACCCGTTGTCGGACATGCTGGATCATCCCAAAACTTCGAAAGCTTGGAGAGTAACAATGCTCAAGTTTTCAACGGTCATTCAAAAACCACTAATTCGAAAACTAAACTTGTAGAGAGTCAATCACATGTTATCGGAGAAGCTGGACCGTCCCATAATGTGCAAAAAATAGACCCACATATCAGGATGATGTTACAACGTGATGAGCAGACCGAGAGAAGCAATGCTCATATTTTTCCTGGTGAATTAGAAGTCTCTTCTGAAACAAATTTTATTGAAAGCTTTGATGACGATGATGATATTTTGATATCAAACATATCAAATTTGTCGGAAGATTTCTTCCTGGACTTCGATCACCTCAACGACGATTCTATATTACCTTAG 1605 0.4069 MENDWDLTSIVRSCKATTFTNPSIFSETPPQNLTPTTTTTTTSTSTSTCSIISPINTTPSCLEDFIFNQENSSVANTDTMQNDWDLSSVVRSCKVTTFTSPSMFCETPAQNLTTMVTTTTTNSPGSLINTPPSCFPDFTFNQENSPVSFTSHKLNDLADLNKLRVNFNSTTHIPTPTTASIPISVTNTTSSLTTTTTTFSTHTTPNIITNINTNVHVSNQNSTFFNFSTPIEQNQMQPNEFTEKYSFITKFNHTTSIPTFATAPTTTNHTTINPITTATTFTNPTITIRTHTTTPATHLPQQKPHSRIRKNKNLVTSMYYVKEENLSKDLWQWRKYGRKSIKGSPHSRNYYKCSSCNHCPARKHVEKSDAGEKTYVVTYLGKHNHPAPEVMQNSDNGTSQHKSSEARSPVVGHAGSSQNFESLESNNAQVFNGHSKTTNSKTKLVESQSHVIGEAGPSHNVQKIDPHIRMMLQRDEQTERSNAHIFPGELEVSSETNFIESFDDDDDILISNISNLSEDFFLDFDHLNDDSILP 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g01044 534 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 5 521 IPR044810 GO:0003700
Trre3g01044 534 Gene3D WRKY domain 310 389 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre3g01044 534 ProSiteProfiles WRKY domain profile. 322 388 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre3g01044 534 MobiDBLite consensus disorder prediction 384 418 - -
Trre3g01044 534 MobiDBLite consensus disorder prediction 25 45 - -
Trre3g01044 534 Pfam WRKY DNA -binding domain 328 386 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre3g01044 534 MobiDBLite consensus disorder prediction 389 418 - -
Trre3g01044 534 SMART WRKY_cls 327 387 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre3g01044 534 SUPERFAMILY WRKY DNA-binding domain 320 388 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g01044 Trre-Chr3 7591355 7593170 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g01044 305 403 WRKY Transcription Factor Family AT5G52830 52.525 1.88e-25 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Trre3g01044 WRKY 2.6e-20 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g01044 - - tpra:123896298 528.094