Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g01043 ATGGATTATTTTCAGGAATTCTTGTCGAAAGGGTTTCAACGTAACGCCGCCGTTGCCGCCGCCGCCGGAGATACAAGTCCCGACTCTGTCATCTTCACTCTCGAATCTAACTTGAGTCTCGTCTCCTCTGCTTCCGCTAGCGTCGATCGCTGTTCTTTCACTTTCGATGCTCACGACCACGACTCTTTAAACTCTGAAATCTCACCGAGTTGGTATTGTTATGCCAAGACAGAAGCAGAAGAGCAGGCCCTGAATTTCACGGAAAGAACTGGGCTTGATGTTGTAAGCATTTGTCGTACCCTTGTTTTGGGGCCAATTTTACAGTCAACCACTAATGCAAGCAGCATGTTTCTCATCAATCTCTTAAAAGGCTGTGATACATTGGAGAATGAGCACTGTCAGATTAATCGGATAGTTGACGTTCGAGATGTAGCTGATGCAATACTGTTGGCTTATGAGAATCATGAAGCAGAAAGGAGATACATATGCACTTCACACGCTATCAAGGACCGAGATTTTTTTCCTGTTCAGCTCTATTGTTGCCTTTGA 549 0.4499 MDYFQEFLSKGFQRNAAVAAAAGDTSPDSVIFTLESNLSLVSSASASVDRCSFTFDAHDHDSLNSEISPSWYCYAKTEAEEQALNFTERTGLDVVSICRTLVLGPILQSTTNASSMFLINLLKGCDTLENEHCQINRIVDVRDVADAILLAYENHEAERRYICTSHAIKDRDFFPVQLYCCL 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g01043 182 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 40 168 - -
Trre3g01043 182 Gene3D - 11 176 - -
Trre3g01043 182 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 40 166 IPR036291 -
Trre3g01043 182 Pfam NAD dependent epimerase/dehydratase family 64 158 IPR001509 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g01043 Trre-Chr3 7583939 7587031 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g01043 70 175 Monolignol Biosynthesis Gene Families AT2G33590 53.043 3.69e-28 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g01043 - - gmx:100784817 141.354