Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g01042 ATGGAAAATAATTGGGGATTCTCTTCTATTGCGCATAGCTGCAATCCTTCCAATTTTTGTGAAACTCCACCTCAAAACCTAACCACCACTATCACCAACAACAATAGTATTATTTCCCCTATAAACACCACGCCATCTTGCTTTGACAACTATATTTTTAACCAAGAAAGTAGCTCAATTGCACACACAATGGAAAATGATTGGGATCTATCTTCTATTGTGCGTCGATGCAAACTTACCACCTTTACTAATCCGTCCACCTTTTGTGACACTCCACCTCAAAACCTAACCACCAATGTCACCACCACGACCACAAATAGCCTTGTATCCCCTATGAACACCACACCATCTTGTTTTCCCGATTTTAATTTTAACCAAAAAAATAGTTCAGTTTCTTTTACTCAACTTAAACCAAATGACTTCACAGATCTGAACAAATTGAGGGTCAATTTCAATTCCATCACTCCTTTCCCTACCACCAATATCCCAATCACTGTTACCACCACATCCTCTGCCCTCACCACCACCACCACCTTCTCCACCCAGATCACCCCAAATACATCTACAATCACTACTATGCCTACATCTACAATCACTACTCCCACCACAATCAACAATGCTACCATTATCCCGACCACCACTACTACCACCTTCACTAACCAAACAACCAATATCAGCACTCATACCACCACTAATACACATATGCCTCCACCAAAACCCCAATCAAGAATAAGAAAAAGTAAAAATCCTGTGACATCAGTGTGCCATGTTAAGGAGGAAAAACTTTTAGAAGATGAATGGCAATGGAAAAAGTATGGACGAAAATCCATTAAAGGGTCACCACATTCAAGGAGTTACTACAAATGTAGCAGTTTCAAAGATTGTCCGGCTAGATTACAATTTGAAAAAAGTGAAACCGAAGAGAACACTTATGTTGTAACATATCGAGGAAACCATGATCACCAAAAACCAGATGTTAAACGAAAATCTAATAATGGGAACTCTCGGAACAAGTCGTCAGAGGCTAAATTACCCGTTGTCGGACAAGCTGGATCATCCCAAAACTTCAAAAACTTAGGTGATCCTAATGTGGTGATGGTGCAGTTTGATCAATCGGTGAGTAACAATGCTCAAGTTATCGACGACCATTCAACAATCACTAATCCAGAAATTGAACTTAATGAGAGTCAATCACATGTTGTCAGAGAAGGTGAATCGTCCCAAAATGATCAAAAGTTAGATTCACATAACAAGATGATGTTACAACATGATCAGCCAGAGAGAAGAAATGCTCCGATTTTTCTTGGTGACCCTTATTCTGAAATTGATAGCTCTAATGACAATGATGACATTTTGATACCAAATATGTCAGCTATGGTAGAAGATTTCCTACTGGACATCAATCACATCAATGGTGGTTCTATATTACCATAG 1434 0.3912 MENNWGFSSIAHSCNPSNFCETPPQNLTTTITNNNSIISPINTTPSCFDNYIFNQESSSIAHTMENDWDLSSIVRRCKLTTFTNPSTFCDTPPQNLTTNVTTTTTNSLVSPMNTTPSCFPDFNFNQKNSSVSFTQLKPNDFTDLNKLRVNFNSITPFPTTNIPITVTTTSSALTTTTTFSTQITPNTSTITTMPTSTITTPTTINNATIIPTTTTTTFTNQTTNISTHTTTNTHMPPPKPQSRIRKSKNPVTSVCHVKEEKLLEDEWQWKKYGRKSIKGSPHSRSYYKCSSFKDCPARLQFEKSETEENTYVVTYRGNHDHQKPDVKRKSNNGNSRNKSSEAKLPVVGQAGSSQNFKNLGDPNVVMVQFDQSVSNNAQVIDDHSTITNPEIELNESQSHVVREGESSQNDQKLDSHNKMMLQHDQPERRNAPIFLGDPYSEIDSSNDNDDILIPNMSAMVEDFLLDINHINGGSILP 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g01042 477 SMART WRKY_cls 263 323 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre3g01042 477 Gene3D WRKY domain 249 325 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre3g01042 477 Pfam WRKY DNA -binding domain 264 322 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre3g01042 477 MobiDBLite consensus disorder prediction 225 252 - -
Trre3g01042 477 SUPERFAMILY WRKY DNA-binding domain 257 324 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre3g01042 477 MobiDBLite consensus disorder prediction 315 347 - -
Trre3g01042 477 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 67 438 IPR044810 GO:0003700
Trre3g01042 477 ProSiteProfiles WRKY domain profile. 258 324 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre3g01042 477 MobiDBLite consensus disorder prediction 318 334 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g01042 Trre-Chr3 7581769 7583497 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g01042 241 339 WRKY Transcription Factor Family AT5G52830 50.505 4.80e-24 101
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Trre3g01042 WRKY 1.2e-19 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g01042 - - tpra:123896298 436.032