Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g01041 ATGAGAAAGTATCATGGATTGTCCAAAGGAGCCATTGCAGGCATAGTTGTTGGAGGAGCTTTTGGAATTTTACTTTTGGCATTCATTCTATATATTATGTTCTATACAAGAAAAAAAGTGGCTGAAGTAACCCTTCTACCAGTCCCAGGAGGAGCAATTGAAGATCAATATAGTCAACTCCAACATGGTTGTGGAAGCAGCATTGATAAAGCATCAGAATCTACTACTATTGCATCTCCAAGGTTGACAGGTATTACAGTTGACAAGTCAGTTGAGTTCTCATATGAGGAGTTAGCCAAAGCTACCGATAGCTTTAGCGAGGCTAATATAATCGGTCGAGGTGGATTTGGATCTGTATACTATGCTGAGCTTCGAAATGAGAAAGCTGCAATTAAAAAGATGGATATGCAAGCATCAAAAGAATTCTTAGCTGAACTAAAGGTTCTGACACATGTTCATCACTTGAACTTGGTGCGGCTAATTGGATATTGTGTTGAGGGCTCATTATTTTTGGTTTATGAGTACATTGAGAATGGAAATTTAAGTCAACATTTGCGCGGCACAGAGAAGGATCCATTATCATGGCCAGCTAGAGTTCAAATTGCATTAGATTCAGCAAGAGGATTGGAATACATTCATGAGCATACAGTTCCTGTCTACATTCATCGAGATGTTAAATCAGCAAACATTTTGATCGACAAAAACTTCCGCGGAAAGGTTGCAGATTTTGGTTTGACAAAATTGACCGAATATGGTAGTTCCTCGTTACAAACGCGCCTTGTTGGGACATTTGGTTATATGCCTCCTGAATATGCACAATATGGTGAAGTTTCTCCCAAAATAGATGTATATGCATTTGGAGTTGTTTTGTTTGAGCTTATATCTGGCAAACAAGCTATTGTGAAGACAAATGAGCCTCAGAGTGAATCAAAAGGACTAGTTGCACTGTTTGAAGAAGTTCTTGTTCTGCCAGACCCAAAAGAAGATCTTGGTAAATTTGTTGACACTAGACTTGGTGAAAACTACCCTGTTGACTCAGTATTTAAGATGTGTCAGCTTGCAAAAGCATGTACACATGAAAATGCTCAACTTAGGCCAAGCATGAGATCAATTGTAGTTGCCTTAATGACACTTTCATCAGCAGCTGAGGATTGGGATGTTGGTTCCTTCTATGAAAACCAAGCATTAGTACATTTAATGTCTGGAAGGTAG 1212 0.3894 MRKYHGLSKGAIAGIVVGGAFGILLLAFILYIMFYTRKKVAEVTLLPVPGGAIEDQYSQLQHGCGSSIDKASESTTIASPRLTGITVDKSVEFSYEELAKATDSFSEANIIGRGGFGSVYYAELRNEKAAIKKMDMQASKEFLAELKVLTHVHHLNLVRLIGYCVEGSLFLVYEYIENGNLSQHLRGTEKDPLSWPARVQIALDSARGLEYIHEHTVPVYIHRDVKSANILIDKNFRGKVADFGLTKLTEYGSSSLQTRLVGTFGYMPPEYAQYGEVSPKIDVYAFGVVLFELISGKQAIVKTNEPQSESKGLVALFEEVLVLPDPKEDLGKFVDTRLGENYPVDSVFKMCQLAKACTHENAQLRPSMRSIVVALMTLSSAAEDWDVGSFYENQALVHLMSGR 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g01041 403 FunFam LysM receptor kinase 2 84 175 - -
Trre3g01041 403 FunFam PTI1-like tyrosine-protein kinase 3 176 389 - -
Trre3g01041 403 CDD STKc_IRAK 111 372 - -
Trre3g01041 403 Gene3D Transferase(Phosphotransferase) domain 1 176 387 - -
Trre3g01041 403 ProSiteProfiles Protein kinase domain profile. 105 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre3g01041 403 ProSitePatterns Protein kinases ATP-binding region signature. 111 133 IPR017441 GO:0005524
Trre3g01041 403 Pfam Protein tyrosine and serine/threonine kinase 109 374 IPR001245 GO:0004672|GO:0006468
Trre3g01041 403 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 6 389 IPR044812 GO:0019199|GO:0045087
Trre3g01041 403 SMART serkin_6 105 377 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre3g01041 403 Gene3D Phosphorylase Kinase; domain 1 78 175 - -
Trre3g01041 403 ProSitePatterns Serine/Threonine protein kinases active-site signature. 220 232 IPR008271 GO:0004672|GO:0006468
Trre3g01041 403 SUPERFAMILY Protein kinase-like (PK-like) 83 375 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g01041 Trre-Chr3 7577085 7580205 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g01041 3 403 Receptor kinase-like Gene Family AT3G21630 62.095 1.08e-167 481
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Trre3g01041 PK_Tyr_Ser-Thr 2.1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g01041 - K13429 gmx:100802308 640.573