Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g01040 ATGAGAACAGAGGGAACCTGTTCTTCAGGTTGCAACCTTGCTCTAGCTTCATATTACATACGACAAGGAACAGATTTAACTTACATTAGCAACCTTTTCGATCAACAATCCTCAGAAATTCAAAAGTACAATCCAAATATTACAAACACCGATGTTATTCTAAGTGATACAAGAATAAACGTGCCATTCACGTGTGAGTGTCTAAATGGTGTGTTTTTAGGACACACTTTTTTGTACACAGCAAAACATGGTGACACTTATAACTCAATTGCTAACGTTGAATATTCGAATCTTACAACTGAGGAGTGGGTGACTAGGGTCAATAGTTATCCAGCTACAAATATTCCTGATAATGCTCAAATCAATGTTACTGTTAATTGTTCTTGTGGTGAGAGACACGTGTCAAAAGATTATGGGTTATTTTTAACTTACCCAATTCGGAAAGGTCAAAATTTGAGCGGTATTGCGGTGGAGAATGGTGTTTCGGTGGAGGTGTTGAAGAGTTATAATCCTGGTTCAGATTTTAGTGCTGGACATGGTCTTGTGTTTGTGCCGGCTAAAGGATTGTCCAAAGGAGCCATTGCAGGCATAGTTGTTGGAGGAGCTTTTGGAATTTTACTTTTGGCATTCATTCTATATATTATGTTCTATACAAGAAAAAAAGTGGCTGAAGTAACCCTTCTACCAGTCCCAGGAGGAGCAATTGAAGATCAATATAGTCAACTCCAACATGGTTGTGGAAGCAGCATTGATAAAGCATCAGAATCTACTACTATTGCATCTCCAAGGTTGACAGGTATTACAGTTGACAAGTCAGTTGAGTTCTCATATGAGGAGTTAGCCAAAGCTACCGATAGCTTTAGCGAGGCTAATATAATCGGTCGAGGTGGATTTGGATCTGTATACTATGCTGAGCTTCGAAATGAGAAAGCTGCAATTAAAAAGATGGATATGCAAGCATCAAAAGAATTCTTAGCTGAACTAAAGGTTCTGACACATGTTCATCACTTGAACTTGGTGCGGCTAATTGGATATTGTGTTGAGGGCTCATTATTTTTGGTTTATGAGTACATTGAGAATGGAAATTTAAGTCAACATTTGCGCGGCACAGAGAAGGATCCATTATCATGGCCAGCTAGAGTTCAAATTGCATTAGATTCAGCAAGAGGATTGGAATACATTCATGAGCATACAGTTCCTGTCTACATTCATCGAGATGTTAAATCAGCAAACATTTTGATCGACAAAAACTTCCGCGGAAAGGTTGCAGATTTTGGTTTGACAAAATTGACCGAATATGGTAGTTCCTCGTTACAAACGCGCCTTGTTGGGACATTTGGTTATATGCCTCCTGAATATGCACAATATGGTGAAGTTTCTCCCAAAATAGATGTATATGCATTTGGAGTTGTTTTGTTTGAGCTTATATCTGGCAAACAAGCTATTGTGAAGACAAATGAGCCTCAGAGTGAATCAAAAGGACTAGTTGCACTGTTTGAAGAAGTTCTTGTTCTGCCAGACCCAAAAGAAGATCTTGGTAAATTTGTTGACACTAGACTTGGTGAAAACTACCCTGTTGACTCAGTATTTAAGATGTGTCAGCTTGCAAAAGCATGTACACATGAAAATGCTCAACTTAGGCCAAGCATGAGATCAATTGTAGTTGCCTTAATGACACTTTCATCAGCAGCTGAGGATTGGGATGTTGGTTCCTTCTATGAAAACCAAGCATTAGTACATTTAATGTCTGGAAGGTAG 1758 0.3874 MRTEGTCSSGCNLALASYYIRQGTDLTYISNLFDQQSSEIQKYNPNITNTDVILSDTRINVPFTCECLNGVFLGHTFLYTAKHGDTYNSIANVEYSNLTTEEWVTRVNSYPATNIPDNAQINVTVNCSCGERHVSKDYGLFLTYPIRKGQNLSGIAVENGVSVEVLKSYNPGSDFSAGHGLVFVPAKGLSKGAIAGIVVGGAFGILLLAFILYIMFYTRKKVAEVTLLPVPGGAIEDQYSQLQHGCGSSIDKASESTTIASPRLTGITVDKSVEFSYEELAKATDSFSEANIIGRGGFGSVYYAELRNEKAAIKKMDMQASKEFLAELKVLTHVHHLNLVRLIGYCVEGSLFLVYEYIENGNLSQHLRGTEKDPLSWPARVQIALDSARGLEYIHEHTVPVYIHRDVKSANILIDKNFRGKVADFGLTKLTEYGSSSLQTRLVGTFGYMPPEYAQYGEVSPKIDVYAFGVVLFELISGKQAIVKTNEPQSESKGLVALFEEVLVLPDPKEDLGKFVDTRLGENYPVDSVFKMCQLAKACTHENAQLRPSMRSIVVALMTLSSAAEDWDVGSFYENQALVHLMSGR 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g01040 585 ProSiteProfiles Protein kinase domain profile. 287 560 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre3g01040 585 ProSitePatterns Serine/Threonine protein kinases active-site signature. 402 414 IPR008271 GO:0004672|GO:0006468
Trre3g01040 585 CDD STKc_IRAK 293 554 - -
Trre3g01040 585 Gene3D Transferase(Phosphotransferase) domain 1 358 569 - -
Trre3g01040 585 FunFam LysM receptor kinase 2 266 357 - -
Trre3g01040 585 Gene3D Phosphorylase Kinase; domain 1 260 357 - -
Trre3g01040 585 SMART serkin_6 287 559 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre3g01040 585 CDD LysM 143 174 IPR018392 -
Trre3g01040 585 Pfam Protein tyrosine and serine/threonine kinase 291 556 IPR001245 GO:0004672|GO:0006468
Trre3g01040 585 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 4 571 IPR044812 GO:0019199|GO:0045087
Trre3g01040 585 SUPERFAMILY Protein kinase-like (PK-like) 265 557 IPR011009 -
Trre3g01040 585 FunFam PTI1-like tyrosine-protein kinase 3 358 571 - -
Trre3g01040 585 ProSitePatterns Protein kinases ATP-binding region signature. 293 315 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g01040 Trre-Chr3 7574562 7580205 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g01040 4 585 Receptor kinase-like Gene Family AT3G21630 56.529 0.0 656
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Trre3g01040 PK_Tyr_Ser-Thr 5.6e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g01040 - K13429 gmx:100802308 899.812