Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g01037 ATGGCACATACCCTTTTTCTTTTTCTTACCTCATTTTCTTTGATCCTTTCTTTTTTCCTTCATCTTTCTCTTGCCAACACTGACCCTTCTGATGTTCAAGCTCTTGAGGTTATGTACAATGCATTGAATAATCCAACTGATTTAAAGGGTTGGAAAATTGGTGGTGGTGACCCATGTGGAGATTCATGGAAAGGGATTACTTGTGAAGGTTCATCTGTTGTTTCCATTGATCTTTCTGGTTTAGGACTACATGGAACTCTTGGATACTTGCTTTCAGACCTTAGGTCACTTAGAAAGCTTGACTTGAGTGGCAACAAGATCCATGATCAAATTCCATATCAGTTGCCACCAAATCTTACAAGCCTAAATCTTGCGGGAAATAACTTAACCGGAAATCTTCCATATTCGATTGCTATCATGGTTTCACTCAATTATCTGAATGTGAGCAATAATGCGCTTTCTATGTCAATCGGCGACATTTTTGCTAATCATTCCCGTCTTGATACCCTGGATCTATCATTTAATAACTTTTCCGGGGATCTTCCACCTTCGTTTGGTTCACTGTCAAATCTCTCTTCTCTTTTCTTGCAGAAGAATCAGTTAACTGGGTCTCTTAGTGTTCTTGCTGGTTTGCCGTTGGATAATTTAAATGTTGCAAACAATAATTTCAGTGGATGGATACCTCGTGAGCTTAAATCTATCAATAATTTCATATACGATGGAAATTCTTTCAATGATGGCCCTGCACCTCCTTCGCCAGAATCTACTCCATCTCCACCTAGTGAACCTCATAAAGGTAGTCATCACTCCGGGTCTGGTTCACATACTAAAACACCGGGTTCTGAGGATAAAAATTCCGATGGAGACAAGGGTACGTCAGCCGGGGCCATTGTTGGGATTGTTTTAGGTTCAGTGTTGGTGTTTTCTGTTATTCTCGTTGCTCTTGTTTTCTGTATCCGAAAACTAAAAGGGAAGGAAAAGGGTGCAAGAACTTCTAACGGGAGCGTTCCTCCCGGAATAATCAACGTAACTCCTCAAATGCAAGAACAAAGGGTGAAAAGTGCTGCCGTTATTACAGATCTCAAACCTCGTCCGCCTGCAGAAAATGTGACGATGGATAGGATGGCTATAAAAAGTGGATCAGTAAAGCAGATGAGGTCTCCCATCACTTCCACGTCATACACAGTTGCTACGCTGCAGAGTGCAACAAATAGCTTCAGTCAAGAATTTATTATTGGTGAAGGTTCTCTTGGTCGAGTTTATCGAGCTGAATTCCCAAATGGGAAGGTAATGGCCGTTAAGAAGATTGACAATGCAGCACTGTCCTTACAAGAGGAAGACAATTTTCTTGAAGCTATTTCGAATATGTCACGCTTGCGGCATCCAAATGTTGTTACACTGGCTGGATATTGTGCAGAACATGGCCAACGACTTCTAATTTATGAATATATTGGAAATGGAAATCTTCACGACATGCTCCATTTTGCTGAAGATAGCAGTAAAGCGTTACCTTGGAATGCCCGTGTCCGCATAGCCCTAGGCACAGCCCGGGCCTTAGAGTACTTGCATGAAGTTTGCTTGCCTTCTGTTGTACATAGAAATTTCAAATCAGCAAATATATTACTCGACGAGGAGCTCAATCCTCACCTGTCTGACTGCGGCTTAGCATCCCTTACGCCAAACACCGAGCGACAGGTATCATCAACTCAAATGGTCGGTTCATTCGGTTATAGTGCTCCCGAGTTTGCATTATCAGGAGTATACACCGTAAAAAGCGATGTTTACAGCTTTGGAGTGGTTATGCTGGAACTTCTAACTGGTCGAAAGCCACTTGACAGTTCGAGAGTTAGAGCTGAGCAATCACTTGTGAGGTGGGCTACACCGCAGCTCCATGATATAGATGCCTTGTCCAAAATGGTCGATCCTTGTTTAAATGGAATGTATCCTGCAAAATCGTTGTCACGCTTCGCTGATATCATTGCTCTCTGTGTTCAGCCGGAACCAGAATTTCGACCTCCAATGTCCGAGGTGGTGCAAGCATTGGTACGATTAGTACAAAGAGCGAGCGTGGTTAAAAGGAGACCAAGTGATGAATCTGGTTTTTTTGGTCACAAGACACCAGACCATGAGTCCATGGACATGTCATTTTAA 2151 0.4258 MAHTLFLFLTSFSLILSFFLHLSLANTDPSDVQALEVMYNALNNPTDLKGWKIGGGDPCGDSWKGITCEGSSVVSIDLSGLGLHGTLGYLLSDLRSLRKLDLSGNKIHDQIPYQLPPNLTSLNLAGNNLTGNLPYSIAIMVSLNYLNVSNNALSMSIGDIFANHSRLDTLDLSFNNFSGDLPPSFGSLSNLSSLFLQKNQLTGSLSVLAGLPLDNLNVANNNFSGWIPRELKSINNFIYDGNSFNDGPAPPSPESTPSPPSEPHKGSHHSGSGSHTKTPGSEDKNSDGDKGTSAGAIVGIVLGSVLVFSVILVALVFCIRKLKGKEKGARTSNGSVPPGIINVTPQMQEQRVKSAAVITDLKPRPPAENVTMDRMAIKSGSVKQMRSPITSTSYTVATLQSATNSFSQEFIIGEGSLGRVYRAEFPNGKVMAVKKIDNAALSLQEEDNFLEAISNMSRLRHPNVVTLAGYCAEHGQRLLIYEYIGNGNLHDMLHFAEDSSKALPWNARVRIALGTARALEYLHEVCLPSVVHRNFKSANILLDEELNPHLSDCGLASLTPNTERQVSSTQMVGSFGYSAPEFALSGVYTVKSDVYSFGVVMLELLTGRKPLDSSRVRAEQSLVRWATPQLHDIDALSKMVDPCLNGMYPAKSLSRFADIIALCVQPEPEFRPPMSEVVQALVRLVQRASVVKRRPSDESGFFGHKTPDHESMDMSF 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g01037 716 CDD STKc_IRAK 412 684 - -
Trre3g01037 716 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 16 685 IPR046959 -
Trre3g01037 716 ProSiteProfiles Protein kinase domain profile. 406 684 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre3g01037 716 Gene3D Phosphorylase Kinase; domain 1 368 483 - -
Trre3g01037 716 Pfam Protein tyrosine and serine/threonine kinase 411 681 IPR001245 GO:0004672|GO:0006468
Trre3g01037 716 Gene3D Ribonuclease Inhibitor 28 256 IPR032675 -
Trre3g01037 716 SUPERFAMILY L domain-like 27 234 - -
Trre3g01037 716 SUPERFAMILY Protein kinase-like (PK-like) 383 681 IPR011009 -
Trre3g01037 716 MobiDBLite consensus disorder prediction 261 279 - -
Trre3g01037 716 MobiDBLite consensus disorder prediction 243 290 - -
Trre3g01037 716 SMART LRR_typ_2 188 210 IPR003591 -
Trre3g01037 716 SMART LRR_typ_2 94 122 IPR003591 -
Trre3g01037 716 SMART LRR_typ_2 140 163 IPR003591 -
Trre3g01037 716 MobiDBLite consensus disorder prediction 696 716 - -
Trre3g01037 716 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 28 255 - -
Trre3g01037 716 Pfam Leucine rich repeat N-terminal domain 29 68 IPR013210 -
Trre3g01037 716 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 371 483 - -
Trre3g01037 716 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 484 695 - -
Trre3g01037 716 Gene3D Transferase(Phosphotransferase) domain 1 484 701 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g01037 Trre-Chr3 7539390 7544088 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g01037 140 716 Strubbelig Receptor Gene Family AT4G22130 71.280 0.0 817
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Trre3g01037 PK_Tyr_Ser-Thr 2.7e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g01037 - - gmx:100781455 1098.19