Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g01036 ATGGAGGGTAGTAGTAGTTCTAATGGAAGTTCTTCTTATCATGTTATGAGTGCTTTTGGTGAAAACAGTGGTGGGCTATGTTCTTCAATGATGATGATGCCTTTAGTCACTTCTCATCAACAACATCATCAACATCATAATCATCTATTAAATTCCAACAATAATCCTAATAACAACAATACTAATGCAAACAACAATAGTTGTCACTTCCTTCCTATCCCTAATTCTACTAATAACAACAACAATAATCACTACAACAATTCTATCATGCTTCAAAATAATACCAATACTACTCCTGGTTTAGGTTACTATTTCATGGATAACAACAATAATGGAAGTTCTTCTTCATCTTCTTCTGGTGTTAAAGCTAAAATCATGGCTCATCCTCACTATCATCGTCTCTTAGAAGCTTACATCAATTGTCAAAAGGTTGGAGCACCAGGTGAAGTTGTGGCTAGGTTAGAAGAAGCATGTGCATCTGCAGTGAGAATGGGTGGAGAAACAGTTGGATCAGGTTGCATAGGTGAAGATCCAGCTTTGGATCAGTTCATGGAAGCTTATTGTGAGATGTTGATTAAGTATGAACAAGAACTTTCAAAACCCTTGAAAGAAGCCATGCTTTTTCTTCAAAGGATTGAAGTCCAGTTAAAAAATCTTACACTTTCTTCTTCTTCAGATAATATTGCTTGTAATGAAGGTGGAGATAGGAATGGATCCTCTGAAGAAGATCATGTTGATCTATACAACAACATGGTAGATCCTCAGGCAGAAGACAGAGAATTAAAGGGACAGCTTTTGAGAAAGTACAGTGGATATTTGGGCAGTCTGAAGCAAGAATTCATGAAGAAAAGGAAAAAAGGAAAACTACCAAAAGAAGCAAGGCAACAATTACTTGAATGGTGGAGCAGACATTACAAATGGCCTTATCCTTCTGAGTCACAGAAACTGGCGCTAGCAGAGTCAACAGGTCTTGATCAGAAGCAAATAAACAACTGGTTTATTAATCAAAGAAAAAGGCACTGGAAGCCATCAGAGGACATGCAGTTTGTGGTAATGGATCCAAGCCATCCACATTATTACATGGATAATAATGTTATCACCAATTCATATCCTATGGATCTATCCAACACCATGCTCTAG 1140 0.3719 MEGSSSSNGSSSYHVMSAFGENSGGLCSSMMMMPLVTSHQQHHQHHNHLLNSNNNPNNNNTNANNNSCHFLPIPNSTNNNNNNHYNNSIMLQNNTNTTPGLGYYFMDNNNNGSSSSSSSGVKAKIMAHPHYHRLLEAYINCQKVGAPGEVVARLEEACASAVRMGGETVGSGCIGEDPALDQFMEAYCEMLIKYEQELSKPLKEAMLFLQRIEVQLKNLTLSSSSDNIACNEGGDRNGSSEEDHVDLYNNMVDPQAEDRELKGQLLRKYSGYLGSLKQEFMKKRKKGKLPKEARQQLLEWWSRHYKWPYPSESQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVVMDPSHPHYYMDNNVITNSYPMDLSNTML 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g01036 379 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 54 349 - -
Trre3g01036 379 SMART ELK_2 260 281 IPR005539 GO:0003677
Trre3g01036 379 SMART HOX_1 282 347 IPR001356 GO:0003677
Trre3g01036 379 ProSiteProfiles ELK domain profile. 260 280 IPR005539 GO:0003677
Trre3g01036 379 CDD homeodomain 292 344 IPR001356 GO:0003677
Trre3g01036 379 Pfam KNOX1 domain 121 159 IPR005540 GO:0003677|GO:0005634
Trre3g01036 379 Pfam KNOX2 domain 173 220 IPR005541 GO:0003677|GO:0005634
Trre3g01036 379 SMART KNOX1_2 119 163 IPR005540 GO:0003677|GO:0005634
Trre3g01036 379 ProSiteProfiles 'Homeobox' domain profile. 280 343 IPR001356 GO:0003677
Trre3g01036 379 SUPERFAMILY Homeodomain-like 282 358 IPR009057 -
Trre3g01036 379 Gene3D - 285 347 - -
Trre3g01036 379 SMART KNOX2_2 170 221 IPR005541 GO:0003677|GO:0005634
Trre3g01036 379 FunFam Homeobox protein knotted-1-like 2 285 347 - -
Trre3g01036 379 Pfam ELK domain 260 281 IPR005539 GO:0003677
Trre3g01036 379 MobiDBLite consensus disorder prediction 38 75 - -
Trre3g01036 379 ProSitePatterns 'Homeobox' domain signature. 318 341 IPR017970 GO:0000981|GO:0006355
Trre3g01036 379 Pfam Homeobox KN domain 300 339 IPR008422 GO:0003677|GO:0006355
Trre3g01036 379 MobiDBLite consensus disorder prediction 47 75 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g01036 Trre-Chr3 7501330 7508307 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g01036 121 379 Homeobox Transcription Factor Family AT1G62360 78.327 1.32e-131 380
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Trre3g01036 KNOX2 5.8e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g01036 - - gmx:100805837 506.138