Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g01028 ATGAATGTAATTGATAATTGTTGGAGACCAAATCCTGAATGGAAAAGACATAGACAACAACTAGCGACTTGCTCCGTAGGCTATGTTGGAAAGATGATAAACAACATCGGTAACGACCTTATACATTATAAAGTTACTGATCCAAATGACGATCCTATAACCCCCAAACCTGGTACGTTAAGATATGGAACATCTATAATTCAAGGTAAAGTGTGGATCACATTCCAAAAGGATATGAACATTAAGCTCATGAAACCCCTACTCATTAGTAGTTTCACTACCATTGATGGTCGCGGCGTCAATGTCCACATTGCTAATAATGCATGTTTGATGATATTCAAGGCCACCAACATAATCATTCATAGCATTCGAATTCATCATTGCAAAGCTCAAGCACCAGGGATGGTGATGGGGCCCAATGGAAAGGTAATTCATATGGGTTCGGTAGATGGAGATGCAATTAGATTGGTCACGGCTTCAAAAATTTGGATTGATCATAATACACTTTATGATTGTGAAGATGGTCTTCTTGATGTCACAAGAGGTTCTACTGATATCACTATATCCAATAATTGGTTTAGAGAACAAGATAAAGTTATGCTTCTTGGTCATGATGATGGGTATATGAGAGATCAAAACATGAAAGTTACCGTTGTGTACAATCATTTTGGACCTAACTGCAACCAACGGATGCCTAGGATTCGCCATGGATATGCACATGTAGCCAACAATCTTTACTTAGGGTGGATGCAGTATGCCATCGGTGGAAGTATGGGGCCCAGTCTTAAAAGTGAGGCTAATCTCTTCATAGCACCAAAAGTTGGAAGTAAAGAGGTCACTTGGAGAAAAAGTGGTAATACAAGTGGAGACAAATGGGAATTTTATTCCGTAAGGGATGCATTTGAAAATGGAGCCTCCTTTGCAGTAACAAAAGGAGGACGTGTGCCAAAGCCAAATTATAATAAAGAACAAAGCTTTAAAGTTGCTGATGTTAAATCTGTTAGATCATTGACAAGATCATCTGGCGCATTTCAATGTAGTAGAACATTTATATGTTGA 1059 0.3853 MNVIDNCWRPNPEWKRHRQQLATCSVGYVGKMINNIGNDLIHYKVTDPNDDPITPKPGTLRYGTSIIQGKVWITFQKDMNIKLMKPLLISSFTTIDGRGVNVHIANNACLMIFKATNIIIHSIRIHHCKAQAPGMVMGPNGKVIHMGSVDGDAIRLVTASKIWIDHNTLYDCEDGLLDVTRGSTDITISNNWFREQDKVMLLGHDDGYMRDQNMKVTVVYNHFGPNCNQRMPRIRHGYAHVANNLYLGWMQYAIGGSMGPSLKSEANLFIAPKVGSKEVTWRKSGNTSGDKWEFYSVRDAFENGASFAVTKGGRVPKPNYNKEQSFKVADVKSVRSLTRSSGAFQCSRTFIC 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g01028 352 Pfam Pectate lyase 88 269 IPR002022 -
Trre3g01028 352 Gene3D - 1 345 IPR012334 -
Trre3g01028 352 PANTHER PECTATE LYASE 18-RELATED 1 348 IPR045032 GO:0030570
Trre3g01028 352 PRINTS Pollen allergen Amb family signature 252 271 IPR018082 -
Trre3g01028 352 PRINTS Pollen allergen Amb family signature 292 316 IPR018082 -
Trre3g01028 352 PRINTS Pollen allergen Amb family signature 150 171 IPR018082 -
Trre3g01028 352 PRINTS Pollen allergen Amb family signature 230 249 IPR018082 -
Trre3g01028 352 PRINTS Pollen allergen Amb family signature 86 102 IPR018082 -
Trre3g01028 352 PRINTS Pollen allergen Amb family signature 323 346 IPR018082 -
Trre3g01028 352 PRINTS Pollen allergen Amb family signature 24 41 IPR018082 -
Trre3g01028 352 SUPERFAMILY Pectin lyase-like 7 337 IPR011050 -
Trre3g01028 352 SMART amb_all 78 275 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g01028 Trre-Chr3 7436955 7438526 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g01028 32 279 Polysaccharide Lyase AT5G09280 70.968 1.65e-141 401
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g01028 K01728 - gmx:100780437 636.721