Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g01009 ATGGATTGGACTAGAGGGAGAATCATTGGTCGGGGCTCGACCGCAGTTGTTTATATGGCCGAGCACCGTGGTGATTTTGGTGAAGTGTGTGCGGTGAAGTCTGCAGAGCTTCACCGCGCGGAGTTTTTGAAGAAAGAACAAGAGATTCTATCTAAGGTGAAATGTTCACAAATTGTGAATTATCAAGGTTGTGAAGTTACGGTTGAGGATGGTGTTTATTTGTTTAATTTGTTTATGGAGTATGCGAATAAAGGGACTGTTTCCGATGCGGTTCGCGGTGGAAATGGAATGGAGGAAGCTATGGTGGGGTTATATGTGCGGCAAATTCTACTAGGGCTTGAGTATCTTCATTCAAATGGGATAGTGCATTGTGATTTGAAGGGACAAAATGTGTTATTGACGGAACAAGGAGCGAAAATTGCGGATTTTGGTTGTGCTAGGAGGGTGAAAGAGGAATTGGTGATCTCCGGTACACCGGTTTTTATGGCGCCGGAGGTGGCGCGTGGCGAGGAGCAGGGGTTTGCTGCTGATGTATGGGCTTTGGGATGTACTATGTTGGAGATGATCACAGGGAAAATGCCGTGGGTTGGAGTTTCTGATCCGGCGGCTGTTTTATATCGAATTGGATTCTCCGGCGATGTGCCAGAGATTCCTGATTCTGTTTCGGAACGGGGGAAGGATTTTTTAAGGAGATGTTTGAAGAGAGATCCAAATGAGAGATTATCTGTAATTGAACTTCTGGAACATGATTTTGTTGCTGAGAAGTTTAAGGATTCGGCGTTGGATTCGGAAACTCCGACGACTGTGTTGGAAGGTGGGTTTTGGGATTGGGATTCTTTGGAAAAAACTCATGAGGTGGGTCCCACAATTGATCATTGTCCCTCGGATTCTTCGAGTTCGAGTCCAAGAGACAGAATTCAAAGATTGTGTTCAAATGAGGCTTGTTGGAAATTTGATGATGATGAAGAATGGGTTACTGTGAGAAACAATCGTGAGGATTTGAATGCATTGTCATTTGAAGAAATGGATGATAATGATTCAGAGATTGAATCAGACATTGTTTGTGAACATGTAGCTGCAATTGTGGCTGTTTTGTTAGAGATTTTTTCTCTGTATGTCAATGCAGAAAGATTGTTCTCTGTGTAA 1146 0.4346 MDWTRGRIIGRGSTAVVYMAEHRGDFGEVCAVKSAELHRAEFLKKEQEILSKVKCSQIVNYQGCEVTVEDGVYLFNLFMEYANKGTVSDAVRGGNGMEEAMVGLYVRQILLGLEYLHSNGIVHCDLKGQNVLLTEQGAKIADFGCARRVKEELVISGTPVFMAPEVARGEEQGFAADVWALGCTMLEMITGKMPWVGVSDPAAVLYRIGFSGDVPEIPDSVSERGKDFLRRCLKRDPNERLSVIELLEHDFVAEKFKDSALDSETPTTVLEGGFWDWDSLEKTHEVGPTIDHCPSDSSSSSPRDRIQRLCSNEACWKFDDDEEWVTVRNNREDLNALSFEEMDDNDSEIESDIVCEHVAAIVAVLLEIFSLYVNAERLFSV 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g01009 381 CDD STKc_MAPKKK 2 252 - -
Trre3g01009 381 ProSitePatterns Protein kinases ATP-binding region signature. 9 33 IPR017441 GO:0005524
Trre3g01009 381 ProSiteProfiles Protein kinase domain profile. 3 252 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre3g01009 381 SMART serkin_6 3 252 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre3g01009 381 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 3 335 - -
Trre3g01009 381 Gene3D Transferase(Phosphotransferase) domain 1 2 284 - -
Trre3g01009 381 Pfam Protein kinase domain 4 252 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre3g01009 381 SUPERFAMILY Protein kinase-like (PK-like) 2 278 IPR011009 -
Trre3g01009 381 ProSitePatterns Serine/Threonine protein kinases active-site signature. 121 133 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g01009 Trre-Chr3 7199021 7200251 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g01009 2 349 MAP Kinase Kinase Kinase AT5G55090 44.054 6.81e-97 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Trre3g01009 Pkinase 1.7e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g01009 K20716 - gmx:100802174 402.519