Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g00996 ATGTCTTCATCTTCATCCTCTTCTCTTATTAGCGGAGTTGTTGATAATAACCTTTCATATCTATCTGAAGTGCGAACTGTTCACTACCGTTTTAATTCTGGTCATCCAGATGTAAATTTTAAACCACCTGCAGTGAGACCTTATGTTCGATCGAAAATGCCTCGGCTTCGATGGACACCAGATCTTCACCGTTGCTTTGCGCATGCAGTTGAAAGGCTTGGAGGAGAAGAAAGGGCTACACCAAAGTTAATTTTACAACTAATGAATGTAAGGGGGATTACTATATCTCATGTCAAAAGCCACCTCCAGATGTATAGGAGCATGAAACAGGAGCTGATGATTCAAGAAGCAAAGAAGAATGATATGGCAGCAGGTTTATTAGCTTCAACAAACTCCTCCTCAGCCCTTGTTCCAAGCTGCCAACAGAGTCCTGGCCAAACACAGAATGCTTATGAGTCAGAGTCTTACAATGGAAATCAAGTGAATCAATCGGTTATTATTTGTAACGGTGATGAGCAGAAGATGCACACATACATCATCTTTGAGGGTATTCTCGGAAGCCATACTGTCCAAGCCAACAAAAGGAACCACGCCAGCGGGGTTGAAAAAGTGAATGAAGAAGACACATTGTCCCTCTTAACAAGCTCAAATGGTTCAAACACAAATTATGTCTCTCTTGAGCTCACGCTCAACTGA 696 0.4195 MSSSSSSSLISGVVDNNLSYLSEVRTVHYRFNSGHPDVNFKPPAVRPYVRSKMPRLRWTPDLHRCFAHAVERLGGEERATPKLILQLMNVRGITISHVKSHLQMYRSMKQELMIQEAKKNDMAAGLLASTNSSSALVPSCQQSPGQTQNAYESESYNGNQVNQSVIICNGDEQKMHTYIIFEGILGSHTVQANKRNHASGVEKVNEEDTLSLLTSSNGSNTNYVSLELTLN 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g00996 231 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 50 110 IPR017930 -
Trre3g00996 231 NCBIfam myb-like DNA-binding domain, SHAQKYF class 54 108 IPR006447 GO:0003677
Trre3g00996 231 Pfam Myb-like DNA-binding domain 56 106 IPR001005 -
Trre3g00996 231 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 43 152 IPR046955 GO:0003700
Trre3g00996 231 FunFam Myb family transcription factor 52 110 - -
Trre3g00996 231 Gene3D - 53 110 - -
Trre3g00996 231 SUPERFAMILY Homeodomain-like 52 110 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g00996 Trre-Chr3 7132354 7136280 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g00996 44 113 G2-like Transcription Factor Family AT1G14600 67.143 1.14e-30 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Trre3g00996 Myb_DNA-binding 5.9e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g00996 - - gmx:100798980 229.95