Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g00993 ATGGCTGAGGCGGCACAACCTAATGCTGAGCTGTTGGAATGGCCGAAAAAGGATAAGCGCCGCATCCTGCATGCTGTTTACCGTGTTGGTGATCTTGATCGCACCATCAAGTTTTATACTGAAGCTTTTGGAATGAAGCTTTTGAGGAAAAGAGATGTTCCTGAAGAGAAATATGCCAATGCTTTTCTTGGATTTGGCCCTGAAACATCCAATTTTGTTGTGGAATTAACTTATAATTATGGAGTGACCTCATACGACATTGGAACTGGTTTCGGACATTTTGCTATCGCAACTCCAGATGTCTACAAGTTTGTTGAAAATGTCCGAGCTAAGGGTGGAACCGTCACTAGGGAGCCTGGTCCAGTTAGTGGCGGGTCAACTGTTATCGCCTTTGTGAAGGATCCTGATGGTTATATTTTTGAAATTCTCGAAAGAGCTTCAACGCCTGAGCCATTATGCCAAGTAATGCTTCGTGTTGGTGACTTAGAGCGCTCAATTAAGTTTTATGAAAAGGCTTTGGGTTTGAAGCTGGTGAAGAAGGTTGATAGACCTCAATACAAGTACACTTTAGCTATGCTTGGGTATGCAGAGGAGCATGAGACAGTTGTTTTGGAGCTGACATATAACTATGGTGTCACTGAATACACCAAGGGAAATGCTTACGCACAGGTTGCTATTGGCACTGATGATGTATACAAGAGTGCTGAGGTAGTCAACATAGTCACTCAAGAGCTTGGAGGAAAGATTACCAGGCAGCCAGGGCCAATTCCTGGCCTTAACACAAAGATCACTTCTTTCTTAGATCCAGATGGATGGAAAACTGTGTTGGTTGACAACCAAGATTTTCTGAAGGAATTGGAATGA 864 0.4329 MAEAAQPNAELLEWPKKDKRRILHAVYRVGDLDRTIKFYTEAFGMKLLRKRDVPEEKYANAFLGFGPETSNFVVELTYNYGVTSYDIGTGFGHFAIATPDVYKFVENVRAKGGTVTREPGPVSGGSTVIAFVKDPDGYIFEILERASTPEPLCQVMLRVGDLERSIKFYEKALGLKLVKKVDRPQYKYTLAMLGYAEEHETVVLELTYNYGVTEYTKGNAYAQVAIGTDDVYKSAEVVNIVTQELGGKITRQPGPIPGLNTKITSFLDPDGWKTVLVDNQDFLKELE 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g00993 287 NCBIfam lactoylglutathione lyase 22 147 IPR004361 GO:0004462|GO:0046872
Trre3g00993 287 ProSitePatterns Glyoxalase I signature 1. 154 175 IPR018146 GO:0004462|GO:0046872
Trre3g00993 287 CDD GlxI_Ni 22 143 - -
Trre3g00993 287 Gene3D - 1 147 IPR029068 -
Trre3g00993 287 ProSiteProfiles Vicinal oxygen chelate (VOC) domain profile. 151 279 IPR037523 -
Trre3g00993 287 Gene3D - 148 287 IPR029068 -
Trre3g00993 287 ProSiteProfiles Vicinal oxygen chelate (VOC) domain profile. 21 145 IPR037523 -
Trre3g00993 287 SUPERFAMILY Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 152 279 IPR029068 -
Trre3g00993 287 SUPERFAMILY Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 20 147 IPR029068 -
Trre3g00993 287 FunFam Lactoylglutathione lyase 148 287 - -
Trre3g00993 287 ProSitePatterns Glyoxalase I signature 2. 88 100 IPR018146 GO:0004462|GO:0046872
Trre3g00993 287 Pfam Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 21 142 IPR004360 -
Trre3g00993 287 Pfam Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 154 273 IPR004360 -
Trre3g00993 287 PANTHER LACTOYLGLUTATHIONE LYASE 5 287 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g00993 Trre-Chr3 7102585 7105942 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g00993 154 278 Calmodulin-binding Proteins AT1G08110 27.333 1.16e-11 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g00993 K01759 - gmx:100799447 540.421
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre3g00993 3 7102585 7105942 Trre3g00993 3 7102585 7105942 ECH