Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g00987 ATGGATCAAAAGAAGCAAGAGCAGTCAAAGGAACAAGGGAACCATGCTCCAACAGGAACACAAGAAAATGGATCAAACCAGATAGGGCCACTATCTTACCCTCTAATTCACAGTGCAGCTGGCTTTTCACCCTATCTGAGCAGAGATCACTTCCAACATTTTTCTCACAACTTTTTTCACCAACAAGATTTGCAGACAAAACTCGCCACTTTCTGGGCGAAACAAAGGGAAGAAATTGAGGAGACAGTTGATTTCAAAAATAATCCCATTCCTTTACAGAGGATTAAGAAGATCATGAAAGCGGACGAGGGAGTGAATAAAGTAGCAGCTGAAGCACTTCCTCTACTTGCTAAGGCATGTGAGATGTTTATTATGGAGCTAACATTAAGGTCTTGGGCAAATGCTGAATTTAACAAAAGAAGAACACTTCAAAAGAGTGACATTGCAGCTGCAATATCAAGTACTGATGTATTTGATTTCCTAGTTGATATTGCTCCAACTGAAGACACAAAGGAACATGACATATTTAAGGATATACCAAAAAGAGAGCGTGTACCTATGCAACCTCAGTATTGTTATGTGCCTGGTGTTCCTATGCAACCTCAGTATTGTTATGTGCCTGGTGTTCCTATGCAACCTCAGCATGTTCCTATGCAACCTCAATATGCTGCAGGTCCATCCTATGGTCCTCCAGGAATGCTTATGGGAGGACATGTTCTCAATCAACCTTATTACAACATGCAGCTACCTCATCCTTTTGCAAATCCAATGTTTCCAATTCCAAAACAGGATGAGGAAAATGATGATTCTACTGATGTGCCTGATTCAGAGAATTAA 837 0.4062 MDQKKQEQSKEQGNHAPTGTQENGSNQIGPLSYPLIHSAAGFSPYLSRDHFQHFSHNFFHQQDLQTKLATFWAKQREEIEETVDFKNNPIPLQRIKKIMKADEGVNKVAAEALPLLAKACEMFIMELTLRSWANAEFNKRRTLQKSDIAAAISSTDVFDFLVDIAPTEDTKEHDIFKDIPKRERVPMQPQYCYVPGVPMQPQYCYVPGVPMQPQHVPMQPQYAAGPSYGPPGMLMGGHVLNQPYYNMQLPHPFANPMFPIPKQDEENDDSTDVPDSEN 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g00987 278 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 38 178 - -
Trre3g00987 278 FunFam Nuclear transcription factor Y subunit gamma 56 167 - -
Trre3g00987 278 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 90 152 IPR003958 -
Trre3g00987 278 Gene3D Histone, subunit A 51 167 IPR009072 GO:0046982
Trre3g00987 278 MobiDBLite consensus disorder prediction 12 30 - -
Trre3g00987 278 MobiDBLite consensus disorder prediction 257 278 - -
Trre3g00987 278 SUPERFAMILY Histone-fold 46 161 IPR009072 GO:0046982
Trre3g00987 278 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g00987 Trre-Chr3 7055203 7056039 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g00987 68 175 CCAAT-HAP5 Transcription Factor Family AT1G56170 66.667 2.49e-45 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Trre3g00987 CBFD_NFYB_HMF 1.7e-16 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g00987 K08066 - ming:122057803 182.956