Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g00980 ATGTCGACGGTGTACGTTTTGGAACCTCCGACAAAGGGAAAGGTAGTCGTCAATACAACACGCGGCCCTATCGACATTGAGCTATGGCCTAAAGAAGCTCCCAAAGCCGTTAGAAACTTCGTTCAACTCTGTCTCGAAGGTTACTACGACAACACTATCTTCCACCGTATTCTCAAAGACTTTCTCGTTCAGGGTGGTGATCCCACCGGCACCGGCACTGGAGGTGAAAGTATTTATGGAGATGTTTTTGCTGATGAGTTTCATTCGCGTATTAAATTCAAGCATAGAGGTTTGGTTGCAATGGCGAATTCTGGAACACCTAATTCTAATGGAAGTCAGTTTTTTATTACTCTTGATCGTTGTGATTGGCTTGATCGAAAACATACCATTTTCGGAAAGGTGACAGGAGATACAATGTATAATCTGTTGAGACTTGGTGAAGTTGAGACTGATAAGAATGACCGGCCATTAGATCCAGCTCCAAAGATATTGTCAGTTGAGGTGTTGTGGAACCCATTTGAAGACATTGTTCCAAGAACACTTCAGAAACCTCAGACTAAAGCTACACATGATACAGATGGTAAAGATGTAAAGAGGAAAGGTGTAAAAAATAAGAACTTGCTTTCATTTGGGGAAGAAACTGAAGAAGAGGAAAAAGAATTGACATTGGTGAAGAAAAAGATTGTGAGCAGTCATGATGTCTTGAATGATCCTCGTCTTCTAAAGGACGAAAATGCTAACAATGAATTGACTTCATCTGAAAGTAAATTAAAAAGGGATATGCAATTATCTGTAAGGGATGCACTTAACACAAAAAAAGAAGAGCCTCAGAAAGATTCAGGAGCTGGTAAATTGGCTCATCTTGATTCCAGTGATGACGATGAAGCAGATTTTGATTCAAGAATGCGCATGCAAATACTCAAAAAGCGGAAGGAACTGGATGATCTCCCGCCCAAACCAAAGTTACAAACTGGAAGGTCCAGGACCAGGTCCAGTCCAGAGAACCATACTGTGTCAAGTGCTAGGTCCAATTCTTTAAGTGCCGATGAGGATCAACCACGAGTGGAAAAACTGTCCATGAAGAAAAAGGGAATAGGATCCGAAGCAAGAGCTGAACGAATGGCTAATGCAGACACGGATATGCAGCTTTTGAATGAAGCGGAGAGAGGAAGACATTTGCAGAAGCAGAAGAAACGCAGACTTCAAGGGCGTGAAGATGAAGTTCTGGCAAAACTTGAAAAATTTAAAACCAAGGAGACACCAACAACTGTTGAATCTAAACATGTTAGTGATGAGTTATCTGACTGGAGAAGTGGTGGCTTAAAATTCTCCCCTGCAGTTGGCAAGGACCGCATGTCTCGCACTGAGGATCCAAATGATTATGTTGTGCTTGACCCTCTTTTGGAGAAGGGGAAAGAGAAGTTCAACAAGATGCAAGCCAAACAAAAGAGACGAGAACGAGAATGGGCTGGGAGATCTCTTACCTGA 1488 0.422 MSTVYVLEPPTKGKVVVNTTRGPIDIELWPKEAPKAVRNFVQLCLEGYYDNTIFHRILKDFLVQGGDPTGTGTGGESIYGDVFADEFHSRIKFKHRGLVAMANSGTPNSNGSQFFITLDRCDWLDRKHTIFGKVTGDTMYNLLRLGEVETDKNDRPLDPAPKILSVEVLWNPFEDIVPRTLQKPQTKATHDTDGKDVKRKGVKNKNLLSFGEETEEEEKELTLVKKKIVSSHDVLNDPRLLKDENANNELTSSESKLKRDMQLSVRDALNTKKEEPQKDSGAGKLAHLDSSDDDEADFDSRMRMQILKKRKELDDLPPKPKLQTGRSRTRSSPENHTVSSARSNSLSADEDQPRVEKLSMKKKGIGSEARAERMANADTDMQLLNEAERGRHLQKQKKRRLQGREDEVLAKLEKFKTKETPTTVESKHVSDELSDWRSGGLKFSPAVGKDRMSRTEDPNDYVVLDPLLEKGKEKFNKMQAKQKRREREWAGRSLT 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g00980 495 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED 11 219 IPR044666 -
Trre3g00980 495 MobiDBLite consensus disorder prediction 186 200 - -
Trre3g00980 495 Gene3D - 2 183 IPR029000 -
Trre3g00980 495 MobiDBLite consensus disorder prediction 324 348 - -
Trre3g00980 495 SUPERFAMILY Cyclophilin-like 14 186 IPR029000 -
Trre3g00980 495 MobiDBLite consensus disorder prediction 399 435 - -
Trre3g00980 495 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 22 159 IPR002130 GO:0000413|GO:0003755
Trre3g00980 495 MobiDBLite consensus disorder prediction 181 200 - -
Trre3g00980 495 MobiDBLite consensus disorder prediction 253 321 - -
Trre3g00980 495 MobiDBLite consensus disorder prediction 349 373 - -
Trre3g00980 495 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 15 168 IPR002130 GO:0000413|GO:0003755
Trre3g00980 495 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 54 66 IPR002130 GO:0000413|GO:0003755
Trre3g00980 495 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 28 43 IPR002130 GO:0000413|GO:0003755
Trre3g00980 495 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 113 125 IPR002130 GO:0000413|GO:0003755
Trre3g00980 495 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 126 141 IPR002130 GO:0000413|GO:0003755
Trre3g00980 495 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 98 113 IPR002130 GO:0000413|GO:0003755
Trre3g00980 495 MobiDBLite consensus disorder prediction 472 495 - -
Trre3g00980 495 MobiDBLite consensus disorder prediction 239 373 - -
Trre3g00980 495 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 49 66 IPR020892 GO:0003755|GO:0006457
Trre3g00980 495 CDD cyclophilin_CeCYP16-like 8 180 - -
Trre3g00980 495 MobiDBLite consensus disorder prediction 385 457 - -
Trre3g00980 495 FunFam Peptidyl-prolyl cis-trans isomerase CWC27 homolog 1 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g00980 Trre-Chr3 7014705 7020772 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g00980 9 173 U-box Gene Family AT5G67530 47.273 2.17e-42 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g00980 K12737 - gmx:100793148 770.385