Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g00979 ATGAGTGACTCAAAGAATGAAACCATTGCCAACAATGGCCAATATGGCTCTTCAGACCAGATGGAACGTGAGATTGTGCTGGAATTATCCCCGGAAGAGGAAGATATTGTTGCAAAAATGTTTAGATTGGTTGGAAAAAGATGGCATCTCATTGCTGGGAGAATCCCTGGAAGAACTGCAGAAGATATTGAAAAGTATTGGACTTCAAAGTTTTCTTCATCATCAACTGCATGTTAA 237 0.3966 MSDSKNETIANNGQYGSSDQMEREIVLELSPEEEDIVAKMFRLVGKRWHLIAGRIPGRTAEDIEKYWTSKFSSSSTAC 78
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g00979 78 MobiDBLite consensus disorder prediction 1 21 - -
Trre3g00979 78 SUPERFAMILY Homeodomain-like 30 71 IPR009057 -
Trre3g00979 78 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 30 75 IPR017930 -
Trre3g00979 78 ProSiteProfiles Myb-like domain profile. 30 71 IPR001005 -
Trre3g00979 78 Gene3D - 29 77 - -
Trre3g00979 78 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 28 72 - -
Trre3g00979 78 SMART sant 25 73 IPR001005 -
Trre3g00979 78 Pfam Myb-like DNA-binding domain 30 68 IPR001005 -
Trre3g00979 78 CDD SANT 30 67 IPR001005 -
Trre3g00979 78 MobiDBLite consensus disorder prediction 1 19 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g00979 Trre-Chr3 6997592 6998502 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g00979 29 77 MYB Transcription Factor Family AT5G52600 40.816 1.02e-12 58.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trre3g00979 Myb_DNA-binding 1.1e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g00979 - - tpra:123897785 150.214