Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g00971 ATGATGCAGCCTGGACATGGTATGGCTCCTCCAAACATTGGCCAACAGCCACCGCAACAGTATCAGCAAACGCCGCCACAGCCCTACGTCATGATGCCACCTCAAGCCCCCCAGGCCCTTTGGGCCCAATCCGCTCAGCCTCCTCAGCAGCCTGCCAGCGCCGACGAGGTCCGTACTCTCTGGATCGGCGATTTGCAGTATTGGATGGATGAGAGTTATCTCTACACCTGCTTCGGTAACACTGGCGAGGTTACATCTGTGAAAGTGATTAGGAATAAGCAAACTAGTCAATCAGAAGGTTATGGTTTTATCGAGTTTAATACTCGTGCTACGGCTGAAAAAGTGCTTCAAACATACCAAGGAACAATTATGCCAAATGGTGGCCAGAGTTACAGATTGAATTGGGCAACTTTCAGTGCCGGGGAGAGGTCATCTAGGCAGGATGATGGTCCTGATCATACCATTTTTGTTGGTGATTTGGCTGCTGATGTTACTGATTACCTTCTTCAGGAAACTTTTAGGGCTCGTTATAACTCGGTGAAGGGTGCGAAAGTTGTTATTGATAGACTCACTGGTAGGTCTAAGGGTTATGGTTTTGTTAGATTTGCTGATGAGGGTGAACAGATGAGGGCTATGACTGAGATGCAAGGGGTTCTTTGTTCAACAAGACCAATGAGGATTGGACCAGCCACTAACAAGAACCCTGCTGCTACTACTCAGCCGAAAGCTTCATATTCAAACACTCCAGGCGGACAAAGCGAGAATGATCCAAATAATACAACCATTTTTGTTGGCAATTTGGATCCTAATGTCAATGACGATCATCTGAGGCAAGTTTTCAGCCAATATGGTGAATTAGTACATGTGAAAATCCCATCAGGCAAGAGATGTGGGTTTGTCCAATTTTCGGACAGGAGCTGCGCAGAAGAGGCAATAAGAGTTTTAAATGGAACTTTATTGGGTGGACAAAATGTTCGCCTTTCATGGGGCCGCACTCCTTCAAACAAACAGACTCAGCAAGATCCAAACCAGTGGAACGCTGCTGCAGCTGGTGGTGGTGGTGGTGGATACTATGGTTATCCTCAAGGTGGATATGAAAATTATGGTTACGCTGCTCCTCCTGCTGGACAGGATCCCAATGTGTATGGAAGTTATCCTGGTTATGCTGGTTACCAACACCCACAACAGCAACAGCAGCAAATGGGATATAACTAG 1215 0.4675 MMQPGHGMAPPNIGQQPPQQYQQTPPQPYVMMPPQAPQALWAQSAQPPQQPASADEVRTLWIGDLQYWMDESYLYTCFGNTGEVTSVKVIRNKQTSQSEGYGFIEFNTRATAEKVLQTYQGTIMPNGGQSYRLNWATFSAGERSSRQDDGPDHTIFVGDLAADVTDYLLQETFRARYNSVKGAKVVIDRLTGRSKGYGFVRFADEGEQMRAMTEMQGVLCSTRPMRIGPATNKNPAATTQPKASYSNTPGGQSENDPNNTTIFVGNLDPNVNDDHLRQVFSQYGELVHVKIPSGKRCGFVQFSDRSCAEEAIRVLNGTLLGGQNVRLSWGRTPSNKQTQQDPNQWNAAAAGGGGGGYYGYPQGGYENYGYAAPPAGQDPNVYGSYPGYAGYQHPQQQQQQMGYN 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g00971 404 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 153 232 IPR000504 GO:0003723
Trre3g00971 404 Gene3D - 243 371 IPR012677 -
Trre3g00971 404 SMART rrm1_1 261 328 IPR000504 GO:0003723
Trre3g00971 404 SMART rrm1_1 59 134 IPR000504 GO:0003723
Trre3g00971 404 SMART rrm1_1 154 228 IPR000504 GO:0003723
Trre3g00971 404 MobiDBLite consensus disorder prediction 383 404 - -
Trre3g00971 404 SUPERFAMILY RNA-binding domain, RBD 57 233 IPR035979 GO:0003676
Trre3g00971 404 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 58 138 IPR000504 GO:0003723
Trre3g00971 404 MobiDBLite consensus disorder prediction 227 259 - -
Trre3g00971 404 CDD RRM2_SECp43_like 152 231 - -
Trre3g00971 404 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 49 336 - -
Trre3g00971 404 SUPERFAMILY RNA-binding domain, RBD 250 362 IPR035979 GO:0003676
Trre3g00971 404 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 262 325 IPR000504 GO:0003723
Trre3g00971 404 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 155 218 IPR000504 GO:0003723
Trre3g00971 404 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 60 125 IPR000504 GO:0003723
Trre3g00971 404 FunFam Polyadenylate-binding protein RBP45 10 143 - -
Trre3g00971 404 MobiDBLite consensus disorder prediction 1 33 - -
Trre3g00971 404 FunFam Polyadenylate-binding protein RBP45C 144 237 - -
Trre3g00971 404 Gene3D - 144 241 IPR012677 -
Trre3g00971 404 Gene3D - 10 143 IPR012677 -
Trre3g00971 404 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 260 332 IPR000504 GO:0003723
Trre3g00971 404 FunFam Polyadenylate-binding protein RBP45C 238 372 - -
Trre3g00971 404 CDD RRM1_SECp43_like 59 139 - -
Trre3g00971 404 MobiDBLite consensus disorder prediction 390 404 - -
Trre3g00971 404 MobiDBLite consensus disorder prediction 232 259 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g00971 Trre-Chr3 6913630 6917392 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g00971 59 339 Eukaryotic Initiation Factors Gene Family AT4G34110 26.923 1.33e-28 116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g00971 - - gmx:100794675 602.053
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre3g00971 3 6913630 6917392 Trre3g00971 3 6913630 6917392 ECH