Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g00956 ATGAGTTGCTTTCCATGCTGCAAATCAGAGGTTGATCAATCACCTTCATTTAGAGGATGTTCCAAGAAAATTTCCAAAGGAAGAAGAACATTCAAATCATTAGCAGCTGCTATGTCCCTCAAAACAGGCAGCAGCAGGCATAGACAAATTACAGAAGAGATATTAAAATATGGAACTGCAAAAAATGATGTAAAAGTATTCACATATGAAGAATTAGTTGATGCAACAAATAATTTCAGTTCTGATAGTCTTGTTGGAGAAGGTGGATTTGGAAATGTTTATAAAGGATACATGAAAAGCATTGAACAAAATGTAGCCGTGAAGACTCTAAACAGAGAAGGGAATCAAGGAACAAGAGAATTTTTTGCAGAAGTTTTAATGTTAAGTATGGTGAATCATCCAAACCTTGTGAGGCTTATTGGTTATTGTGTAGAAGATGATCAAAGGGTTTTGGTTTATGAGTACATGGCCAATGGAAGTTTGGAAAACCACCTTTTAGATATAGGTAAAGATAAAGAACCATTGGATTGGGAAACAAGGATGAAAATAGCTGATGGAGCAGCTAGAGGACTTGAATATCTGCATAATTCTGCAGATCCACCGGTGATTTTCCGGGATTTTAAATCGTCTAATATACTATTAGATGAAAATTTCAATGCAAAGCTTTCTGATTTTGGTCTTGCTAAGATTGCTCCAAAAGATGGTGAGAACTTGGTCACAACTAGAGTTATGGGGACCTATGGCTATTGTTCACCGGAGTATGCTGCTACCGGTAAATTAACCTCGAAGTCAGATATTTATAGTTTTGGTGTTGTGTTCTTGGAAATAATCACCGGTAGAAGAGTAATCGACACTGCAAGAGAACCAGAAGAACGAAACTTGATTGATTGGGCACAGCCAATGTTTAAGGACAGAACAAAGTTCACTCAAATGGCTGATCCTTTGCTTAAAGAACGGTACCCGGCAAAGGGACTATTTCAAGCCCTAGCAGTGGCAGCAATGTGTCTACAAGAGGATTTCGAGACGCGCCCTGACATGGACGATGTCGTAGAGGCTCTTGAACAGATAACAGTACACAAAACTGAAGAAAAAGACATAGCTGGTGAATCTTCAAATACTACTGGTCATGCTGAATCTTTTAGATCTCAAAATTCAGTTGGATCTGAAAGGGCATAA 1176 0.3827 MSCFPCCKSEVDQSPSFRGCSKKISKGRRTFKSLAAAMSLKTGSSRHRQITEEILKYGTAKNDVKVFTYEELVDATNNFSSDSLVGEGGFGNVYKGYMKSIEQNVAVKTLNREGNQGTREFFAEVLMLSMVNHPNLVRLIGYCVEDDQRVLVYEYMANGSLENHLLDIGKDKEPLDWETRMKIADGAARGLEYLHNSADPPVIFRDFKSSNILLDENFNAKLSDFGLAKIAPKDGENLVTTRVMGTYGYCSPEYAATGKLTSKSDIYSFGVVFLEIITGRRVIDTAREPEERNLIDWAQPMFKDRTKFTQMADPLLKERYPAKGLFQALAVAAMCLQEDFETRPDMDDVVEALEQITVHKTEEKDIAGESSNTTGHAESFRSQNSVGSERA 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g00956 391 CDD STKc_IRAK 85 356 - -
Trre3g00956 391 FunFam Serine/threonine-protein kinase CDL1-like 50 155 - -
Trre3g00956 391 SUPERFAMILY Protein kinase-like (PK-like) 62 356 IPR011009 -
Trre3g00956 391 MobiDBLite consensus disorder prediction 370 391 - -
Trre3g00956 391 ProSiteProfiles Protein kinase domain profile. 79 358 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre3g00956 391 FunFam Serine/threonine-protein kinase PBS1 156 371 - -
Trre3g00956 391 Gene3D Phosphorylase Kinase; domain 1 39 155 - -
Trre3g00956 391 Pfam Protein kinase domain 81 351 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre3g00956 391 PANTHER OS07G0668900 PROTEIN 3 365 - -
Trre3g00956 391 ProSitePatterns Protein kinases ATP-binding region signature. 85 108 IPR017441 GO:0005524
Trre3g00956 391 MobiDBLite consensus disorder prediction 360 391 - -
Trre3g00956 391 Gene3D Transferase(Phosphotransferase) domain 1 156 378 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g00956 Trre-Chr3 6848058 6850821 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g00956 65 353 Glycoside Hydrolase AT3G07070 61.592 1.59e-132 384
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Trre3g00956 Pkinase 2.4e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g00956 - - mtr:25486126 633.254