Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g00948 ATGGCTAATTTCACTTCTTTCTCATCTTCATCTTCCACTCCTCCTACACCACCTTCTTTCTCATACATTTCAGCTTCATCATCTTCTTCTTCAACTTTTGATGATGACTCTTTTGAAGATTCCTGCAGTATATGCTTAGAGTCTTTCACTCTTCATGACCCATCTACTGTTACCTGTTGCAAACATGAATATCACCTGCATTGCATTCTTGAATGGTCACAGAGAAGCAAAGAGTGCCCAATATGTTGGCAATCACTTTCTTTGAAAGACCCTGCTAGCCAAGAGCTTCTGATCGCTGTGGATGCTGAAAAAAGCATAAGATCAAGAAACAATTATTCATCTTCACCCACTAATTCTCGTGTCCCCTTTGGATATTCTAATGATGACCATGATGATTCTTGCTCAGATGACATTGATGTTAATGAGGAAATTATGCGGCGCGTATATGCCGCTGCAAGTAGAGCTCGTCTTGTCCAGAGACAGAAAAGACAAGGATCGCCCGGAGCAGGTCCATCAGAGATGTTTGTTTTCAACTCTTCTTTGCAACCGACTCTTACAATTTCACCAGGTGACAGTAGTTCACCGATCTATGGTTTACCATCAATTGGCCGCAATCATCCTGAGGTTGCAAGAAACATTAGTCGTATTGAGACTGATGTCCCTTACCGGCCCAGAGTTCTTTACAGTCCGTCACCACCTCAGTCACCATCTCAGGGTGAGAGCAAACTGAACACTTCTGAGATGTTCTCCTTTCCCGAGTCCATCAAATCCAAATTGTCTGCTGCATCAGCCAGATATAAGGAATCAATTTCTAAAAGTACACGTGGCCTTAAAGAGAAATTACTTGCTCGTAATGTGACAGTGAAAGAGCTGAGTAAAGGTGTTCAACGTGAGATGAATGCAGGCATAGCTGGAGTTTCACGTATGATTGAACGCTTTGATCTTGCCTCAAAAAGGTCAAGTTCTCCTCTCATTCCGGTCCGTAATGAGGGAACTTCAAGCTTTTCCGAAGGGAGGTTTGTTCTAGAGAAAGACATTGACCATGCTCCAAATGAAGGAAGTGGAGATCATAATGTTAGTTCAGCTGCTCCCTCCCACATTTCAAGCACTATTGTTGGTCGAATGGAAATCCCTTCATGTGTTCAGGGTCGACAATGA 1158 0.4292 MANFTSFSSSSSTPPTPPSFSYISASSSSSSTFDDDSFEDSCSICLESFTLHDPSTVTCCKHEYHLHCILEWSQRSKECPICWQSLSLKDPASQELLIAVDAEKSIRSRNNYSSSPTNSRVPFGYSNDDHDDSCSDDIDVNEEIMRRVYAAASRARLVQRQKRQGSPGAGPSEMFVFNSSLQPTLTISPGDSSSPIYGLPSIGRNHPEVARNISRIETDVPYRPRVLYSPSPPQSPSQGESKLNTSEMFSFPESIKSKLSAASARYKESISKSTRGLKEKLLARNVTVKELSKGVQREMNAGIAGVSRMIERFDLASKRSSSPLIPVRNEGTSSFSEGRFVLEKDIDHAPNEGSGDHNVSSAAPSHISSTIVGRMEIPSCVQGRQ 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g00948 385 ProSiteProfiles Zinc finger RING-type profile. 42 82 IPR001841 -
Trre3g00948 385 SMART ring_2 42 82 IPR001841 -
Trre3g00948 385 MobiDBLite consensus disorder prediction 347 368 - -
Trre3g00948 385 Pfam Ring finger domain 40 82 IPR001841 -
Trre3g00948 385 SUPERFAMILY RING/U-box 37 89 - -
Trre3g00948 385 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 9 91 - -
Trre3g00948 385 MobiDBLite consensus disorder prediction 224 244 - -
Trre3g00948 385 MobiDBLite consensus disorder prediction 108 124 - -
Trre3g00948 385 MobiDBLite consensus disorder prediction 108 134 - -
Trre3g00948 385 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 23 112 IPR013083 -
Trre3g00948 385 MobiDBLite consensus disorder prediction 354 368 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g00948 Trre-Chr3 6767011 6769876 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g00948 36 90 C3H Transcription Factor Family AT4G00335 45.455 8.38e-12 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g00948 K19043 - gmx:100785684 353.984
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre3g00948 3 6767011 6769876 Trre3g00948 3 6767011 6769876 ECH