Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g00935 ATGGATCAAAAGGAGCAAGAGAAACCAAAAGAACAAGGGAATGATGATGTTCCAACACAAACACAAACTCATAACGAAAACCAAAATAAACCGAACCAAATAGCGTCACTATCTCGTCCTCTAATTCACACCGCAGGTACTTCCGCCTTTTCACCCTACCTGAGTAGAGACCATTTCCAACAACAAAAACAACAAGCATCGCAGAAAAAACTCGACACTATTTGGGCAAATCAAAACCATGAAATTGAGGAGACAGTTGATTTCAAAGCTAATTGTTTGCCTTTGGCAAGGATTAGGAAGATCATGAAAGCGGACGAGGGAGTGAGTATGATATCATCAGAGACACCTGTTCTATTTGCTAAAGCATGCGAAATGTTTATTACGGAGTTGACAATGCGGTCATGGGATATCGTAGTGGCGAACAAAAGAAAAACACTTCAAAAGAATGATATTGCATCTGCAATCTCAAGGAATGATATGTTTGATTTTCTAGTTGATATTGTTCCAAGGGAGAACACATTGGAGCATAACATATTTATGGACATACCAAGAAGAGGAAGTGCTCCTTTTGAAAATGTTCCTTATTCTTATGTTCCTTTTCCTGTGCCTATGCCATCTCAGGATGCTGCAGGCCCATCATATGGTCCTCCAAGAATGCTTATGGGAAGATCTCTTATTGATCAACCTCAACACAACAGACAGCTACATCTTCCTTTTGCAACTCAAGTGTTGCCAATCCAAAAACAAGATGAACATTCTTCAAATTTGCCAGATTCAGATGATTGA 786 0.3944 MDQKEQEKPKEQGNDDVPTQTQTHNENQNKPNQIASLSRPLIHTAGTSAFSPYLSRDHFQQQKQQASQKKLDTIWANQNHEIEETVDFKANCLPLARIRKIMKADEGVSMISSETPVLFAKACEMFITELTMRSWDIVVANKRKTLQKNDIASAISRNDMFDFLVDIVPRENTLEHNIFMDIPRRGSAPFENVPYSYVPFPVPMPSQDAAGPSYGPPRMLMGRSLIDQPQHNRQLHLPFATQVLPIQKQDEHSSNLPDSDD 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g00935 261 SUPERFAMILY Histone-fold 58 164 IPR009072 GO:0046982
Trre3g00935 261 MobiDBLite consensus disorder prediction 1 36 - -
Trre3g00935 261 MobiDBLite consensus disorder prediction 15 36 - -
Trre3g00935 261 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 93 155 IPR003958 -
Trre3g00935 261 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 47 191 - -
Trre3g00935 261 FunFam Nuclear transcription factor Y subunit gamma 58 170 - -
Trre3g00935 261 Gene3D Histone, subunit A 55 170 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g00935 Trre-Chr3 6706932 6707717 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g00935 73 234 CCAAT-HAP5 Transcription Factor Family AT1G54830 50.909 3.53e-50 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Trre3g00935 CBFD_NFYB_HMF 5.9e-18 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g00935 K08066 - jre:109010478 194.126