Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre3g00922 | ATGGGTATTTCCTGGAGCACCACCAGAAGAAACAATTACATCCAAAATCCACCTCCACAACCACCACCACCACCACCACAACTACCACCACCACCACCACCACCATACTATTACTCTACAGATTCACATCCACCACCACTTCCTCCTCAACAAGGTTATAACAACAACTACCCTCCTCAAAACATAGGCTATGCAACTCCACCACCTCCACCTCTTCAACCTCAATCTCATTCATTCTACTTCTCTAACCCTAATGCTTACACAAACTATCCCAATTCTTCCATAAATCGATTTCAATTTCATCCTTCTTACTATGTAAATCAACAACAACAACATCCTTGGGGTCCACCTCATCCCTCTTTTCATGCTCCTTCATCAACAACAACAACACCACCTCCTTATGTTGATCATCAAACTGCTAAGAAGATTAGGAATCATGTTAATGTTCATAAAGATACTTTGCATCTTGAGGTTGATCAGAATAACCCTGATCATCACCTTGTTTCTTTCGTTTTTGATGCTGTCTTTAATGGCAGCATCACTATCTTCTACTTTGCGAAGGAAGAAGAAAAATGTAGATTTGTTCCACTCTTTCCTGATGCATTTGTGCCAGTCAAAGTCCCCTTTGAGAAAGGAGCTGGCCAGAAATTTGCTCAGCCTTCAGGAACAGGGATCGACTTAGGCTTCTTTGAGTTGGATGATCTTTCAAAGCCTTCACCTGGGGAAGATGTCTTTCCTCTTGTAATATGCGCTGAAACATGTTTGGAAACTCCCTCGGCAAACGAAACTCCTAAAACTCCGGATGATTCCATGCTAGATGCATCCCCTGATTCCCCTCACATGCAAATTACTCAAGCTGTCTTGGTGAAAAGTAATGGTGATAGTGCTTTCCGGATAAAAGTAGTTAGGCAGATTCTGTGGATCGATGGTGTTCGTTATGAGTTGAGAGAGTTATATGGAATTGGAAGTTCAGAAACTGCAGGCTTTGATGACAGTGATCCTGGAAAGGAGTGTGTAATATGCATGACTGAACCAAAGGATACGGCTGTCTTACCTTGTCGACATATGTGTTTGTGCAGTGAGTGTGCGAAAGCTCTGCGGCTTCAATCCAATAAATGCCCTATATGCCGTCAGCCCATTGAAGAACTTATGGAGATCAAGGTAAAGAGTGGCAATCCATGA | 1182 | 0.4264 | MGISWSTTRRNNYIQNPPPQPPPPPPQLPPPPPPPYYYSTDSHPPPLPPQQGYNNNYPPQNIGYATPPPPPLQPQSHSFYFSNPNAYTNYPNSSINRFQFHPSYYVNQQQQHPWGPPHPSFHAPSSTTTTPPPYVDHQTAKKIRNHVNVHKDTLHLEVDQNNPDHHLVSFVFDAVFNGSITIFYFAKEEEKCRFVPLFPDAFVPVKVPFEKGAGQKFAQPSGTGIDLGFFELDDLSKPSPGEDVFPLVICAETCLETPSANETPKTPDDSMLDASPDSPHMQITQAVLVKSNGDSAFRIKVVRQILWIDGVRYELRELYGIGSSETAGFDDSDPGKECVICMTEPKDTAVLPCRHMCLCSECAKALRLQSNKCPICRQPIEELMEIKVKSGNP | 393 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre3g00922 | 393 | CDD | mRING-HC-C3HC5_MGRN1-like | 336 | 377 | IPR045195 | - | |
Trre3g00922 | 393 | SUPERFAMILY | RING/U-box | 337 | 383 | - | - | |
Trre3g00922 | 393 | FunFam | probable E3 ubiquitin-protein ligase LOG2 | 322 | 387 | - | - | |
Trre3g00922 | 393 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 323 | 387 | IPR013083 | - | |
Trre3g00922 | 393 | MobiDBLite | consensus disorder prediction | 108 | 136 | - | - | |
Trre3g00922 | 393 | Pfam | Zinc finger, C3HC4 type (RING finger) | 336 | 382 | - | - | |
Trre3g00922 | 393 | MobiDBLite | consensus disorder prediction | 108 | 135 | - | - | |
Trre3g00922 | 393 | MobiDBLite | consensus disorder prediction | 1 | 80 | - | - | |
Trre3g00922 | 393 | SMART | ring_2 | 338 | 376 | IPR001841 | - | |
Trre3g00922 | 393 | MobiDBLite | consensus disorder prediction | 15 | 53 | - | - | |
Trre3g00922 | 393 | PANTHER | MAHOGUNIN | 61 | 388 | IPR045194 | GO:0061630 | |
Trre3g00922 | 393 | ProSiteProfiles | Zinc finger RING-type profile. | 338 | 377 | IPR001841 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre3g00922 | Trre-Chr3 | 6603207 | 6607122 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trre3g00922 | 50 | 392 | C3H Transcription Factor Family | AT3G06140 | 52.023 | 4.46e-104 | 310 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trre3g00922 | - | - | vra:106775674 | 490.345 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Trre3g00922 | 3 | 6603207 | 6607122 | Trre3g00922 | 3 | 6603207 | 6607122 | ECH |