Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g00922 ATGGGTATTTCCTGGAGCACCACCAGAAGAAACAATTACATCCAAAATCCACCTCCACAACCACCACCACCACCACCACAACTACCACCACCACCACCACCACCATACTATTACTCTACAGATTCACATCCACCACCACTTCCTCCTCAACAAGGTTATAACAACAACTACCCTCCTCAAAACATAGGCTATGCAACTCCACCACCTCCACCTCTTCAACCTCAATCTCATTCATTCTACTTCTCTAACCCTAATGCTTACACAAACTATCCCAATTCTTCCATAAATCGATTTCAATTTCATCCTTCTTACTATGTAAATCAACAACAACAACATCCTTGGGGTCCACCTCATCCCTCTTTTCATGCTCCTTCATCAACAACAACAACACCACCTCCTTATGTTGATCATCAAACTGCTAAGAAGATTAGGAATCATGTTAATGTTCATAAAGATACTTTGCATCTTGAGGTTGATCAGAATAACCCTGATCATCACCTTGTTTCTTTCGTTTTTGATGCTGTCTTTAATGGCAGCATCACTATCTTCTACTTTGCGAAGGAAGAAGAAAAATGTAGATTTGTTCCACTCTTTCCTGATGCATTTGTGCCAGTCAAAGTCCCCTTTGAGAAAGGAGCTGGCCAGAAATTTGCTCAGCCTTCAGGAACAGGGATCGACTTAGGCTTCTTTGAGTTGGATGATCTTTCAAAGCCTTCACCTGGGGAAGATGTCTTTCCTCTTGTAATATGCGCTGAAACATGTTTGGAAACTCCCTCGGCAAACGAAACTCCTAAAACTCCGGATGATTCCATGCTAGATGCATCCCCTGATTCCCCTCACATGCAAATTACTCAAGCTGTCTTGGTGAAAAGTAATGGTGATAGTGCTTTCCGGATAAAAGTAGTTAGGCAGATTCTGTGGATCGATGGTGTTCGTTATGAGTTGAGAGAGTTATATGGAATTGGAAGTTCAGAAACTGCAGGCTTTGATGACAGTGATCCTGGAAAGGAGTGTGTAATATGCATGACTGAACCAAAGGATACGGCTGTCTTACCTTGTCGACATATGTGTTTGTGCAGTGAGTGTGCGAAAGCTCTGCGGCTTCAATCCAATAAATGCCCTATATGCCGTCAGCCCATTGAAGAACTTATGGAGATCAAGGTAAAGAGTGGCAATCCATGA 1182 0.4264 MGISWSTTRRNNYIQNPPPQPPPPPPQLPPPPPPPYYYSTDSHPPPLPPQQGYNNNYPPQNIGYATPPPPPLQPQSHSFYFSNPNAYTNYPNSSINRFQFHPSYYVNQQQQHPWGPPHPSFHAPSSTTTTPPPYVDHQTAKKIRNHVNVHKDTLHLEVDQNNPDHHLVSFVFDAVFNGSITIFYFAKEEEKCRFVPLFPDAFVPVKVPFEKGAGQKFAQPSGTGIDLGFFELDDLSKPSPGEDVFPLVICAETCLETPSANETPKTPDDSMLDASPDSPHMQITQAVLVKSNGDSAFRIKVVRQILWIDGVRYELRELYGIGSSETAGFDDSDPGKECVICMTEPKDTAVLPCRHMCLCSECAKALRLQSNKCPICRQPIEELMEIKVKSGNP 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g00922 393 CDD mRING-HC-C3HC5_MGRN1-like 336 377 IPR045195 -
Trre3g00922 393 SUPERFAMILY RING/U-box 337 383 - -
Trre3g00922 393 FunFam probable E3 ubiquitin-protein ligase LOG2 322 387 - -
Trre3g00922 393 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 323 387 IPR013083 -
Trre3g00922 393 MobiDBLite consensus disorder prediction 108 136 - -
Trre3g00922 393 Pfam Zinc finger, C3HC4 type (RING finger) 336 382 - -
Trre3g00922 393 MobiDBLite consensus disorder prediction 108 135 - -
Trre3g00922 393 MobiDBLite consensus disorder prediction 1 80 - -
Trre3g00922 393 SMART ring_2 338 376 IPR001841 -
Trre3g00922 393 MobiDBLite consensus disorder prediction 15 53 - -
Trre3g00922 393 PANTHER MAHOGUNIN 61 388 IPR045194 GO:0061630
Trre3g00922 393 ProSiteProfiles Zinc finger RING-type profile. 338 377 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g00922 Trre-Chr3 6603207 6607122 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g00922 50 392 C3H Transcription Factor Family AT3G06140 52.023 4.46e-104 310
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g00922 - - vra:106775674 490.345
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre3g00922 3 6603207 6607122 Trre3g00922 3 6603207 6607122 ECH