Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g00917 ATGTCCGTGCGAGTCTCCTCTCCACAATATCATCATCCCCTAATCTCTCTCACTTTACATACTTCTTCACTCAATCGCCACGATTTTTACACTGACGATATAGTTAAAATAGAAGAAAAAAAAATGATTATTCCAGTGCCAGCAATATCATCCTCTGCCTGCAAACAAGACATGCCCTTAATAAATTTCCAAAAGGGTCTCAACAAAATGGAATCATTATTTCATAATAGAAACAAAGATAAGGTGGTAGTGATTATGGGGGCCACAGGAACTGGAAAGACCAAATTAGCCATAGATTTGGCCAAACATTTTCAACCAGCTGAAATTGTGAATTCAGATAAAATGCAAGTTTATAAAGGTCTTGATATTACAACAAATAAGGTGACAGAAGAAGAATGTGATGGGGTCCCACACCATCTATTAGGTGTATTTGATCCAAATTCAAATTTCACTGCCAATGATTTTTGTTATCATGCTTGTTCAGCTATTGATTCAATTGTTGAAAAAGATGGATTACCAATTATTGCTGGTGGCTCAAATTCATATTTAGATGCTTTAGTGAATCATTGTAGTGAATTTAGGTTAAGGTATGAATGTTGTTTTCTTTGGGTTGATGTTTCACTACCTGTTCTTCATTCATCGCTTCAATCGCGTGTTGATCGTATGATTGAAGCTGGTCAGTTAGATGAAGTTCGTGATTTTTTTGATCCGTTGAGTGATTATACAAAAGGGATTCGAAGAGCTATTGGGGTTCCTGAATTTCATGATTTTCTAATAGCGGAAGCAAATTTAGCGGACGAGAGAATTAAGAAGAGGCTTTTGGAAGATGCTATTGATAGGCTCAAGATTAATAATTGCACACTTGCGAATCGACAGGTTCAAAAGATTCGTCGGTTAAATGGAATGTGGAAAAGGAGTATGCATCGTCTTGATGCCACTGAAACACACCTTAGGCGTGGTTCACATGCTAGTAAGGAGTCATGGGAGGATCAAGTGCTTGCTAAAAGTCTTGTGATCCTCTACAATTTTCTTTACGGGGAAACACGAGTTCGCTCTAGAAGTGTTTCGTCGAAAGATATAATTGCCGCATTTTCTGGGTCATCGCAGACACTGGCATTGCCTGCTATTGCGGCGGCGACTCATTAG 1146 0.3848 MSVRVSSPQYHHPLISLTLHTSSLNRHDFYTDDIVKIEEKKMIIPVPAISSSACKQDMPLINFQKGLNKMESLFHNRNKDKVVVIMGATGTGKTKLAIDLAKHFQPAEIVNSDKMQVYKGLDITTNKVTEEECDGVPHHLLGVFDPNSNFTANDFCYHACSAIDSIVEKDGLPIIAGGSNSYLDALVNHCSEFRLRYECCFLWVDVSLPVLHSSLQSRVDRMIEAGQLDEVRDFFDPLSDYTKGIRRAIGVPEFHDFLIAEANLADERIKKRLLEDAIDRLKINNCTLANRQVQKIRRLNGMWKRSMHRLDATETHLRRGSHASKESWEDQVLAKSLVILYNFLYGETRVRSRSVSSKDIIAAFSGSSQTLALPAIAAATH 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g00917 381 Coils Coil 264 284 - -
Trre3g00917 381 FunFam Adenylate isopentenyltransferase 5, chloroplastic 208 307 - -
Trre3g00917 381 Pfam IPP transferase 195 298 - -
Trre3g00917 381 Pfam IPP transferase 116 191 - -
Trre3g00917 381 Gene3D - 79 344 IPR027417 -
Trre3g00917 381 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 78 235 IPR027417 -
Trre3g00917 381 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 79 343 IPR039657 -
Trre3g00917 381 Gene3D Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain 208 307 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g00917 Trre-Chr3 6549605 6552993 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g00917 196 360 C2H2 Transcription Factor Family AT2G27760 34.555 1.29e-22 97.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g00917 K10760 - gmx:100812928 483.411
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre3g00917 3 6549605 6552993 Trre3g00917 3 6549605 6552993 ECH
Trre15g04677 15 57461316 57462527 Trre3g00917 3 6549605 6552993 PCT