Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g00916 ATGGCGAATCGTCCTGCATGTGCTGCTTGCAGACACCAAAGAAAAAAATGTATGAGAGATTGTATTCTTGCTCCGTATTTTCCAAAAAACAAGCTTCAAGAATATGAAGAAGTTCATAGAGTTTTTGGTTACAACAACGTCACAAAAATGGTTCAAAACCTTGGTGAACAAGAAAGAAAAAATGCCATCAATTCTATTAAATGGGAAGCCAAGATGTGGACTCAAGATCCAATCTTTGGTCCATTTGGTGCTTACAATGATGCTTGTAAGACCATTGCACATATATGGAATCTCCTCCAACAACAACAACAACAACAACAAGCCCATCAAAGAGTTTCAACTTCTGAGCCCAACAAGTTTATGGGCCAGGCCCAAGTTTCATTACCTTCGAGTAATGAAGCTTTACCAATTTCAAATAATGTCAATTGGGCATATTTTGATTCCTCTTATGTGGCTAGTAACAATGTTGTACACAATCCCAATTTTGAATATCAACAAGTAAATTACCTTGGAGGTTCTTTCCAAAATGAGGAGCCAAATGTATTGAAGTGTGTTCCAGGTGGTATTGTGGAAGCTTCACAATTCAATTTTTTGCAAAGTGTGGCAAGTAGTTCTGGCACTAATGTGACAATGGATCAATATTTTCATTATAGTGATGAGAATATTGTGACCAATGAAGACATGGGAATGCAAAGAGATGGTCAAGGAAATTATGGTATTCAAACAATGGCACAAAATAGAATTGACTTGGTGCATTTGTGCAAAGGAATTCCTAGTTCATTACATTTGTACCTGTTGAACAATGGAGTAACAGAAATCAGATGA 825 0.3673 MANRPACAACRHQRKKCMRDCILAPYFPKNKLQEYEEVHRVFGYNNVTKMVQNLGEQERKNAINSIKWEAKMWTQDPIFGPFGAYNDACKTIAHIWNLLQQQQQQQQAHQRVSTSEPNKFMGQAQVSLPSSNEALPISNNVNWAYFDSSYVASNNVVHNPNFEYQQVNYLGGSFQNEEPNVLKCVPGGIVEASQFNFLQSVASSSGTNVTMDQYFHYSDENIVTNEDMGMQRDGQGNYGIQTMAQNRIDLVHLCKGIPSSLHLYLLNNGVTEIR 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g00916 274 Pfam Lateral organ boundaries (LOB) domain 6 100 IPR004883 -
Trre3g00916 274 ProSiteProfiles LOB domain profile. 5 106 IPR004883 -
Trre3g00916 274 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 4 132 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g00916 Trre-Chr3 6530284 6533096 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g00916 6 102 AS2 family AT1G06280 44.330 4.23e-27 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Trre3g00916 LOB 3.7e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g00916 - - mtr:25493051 243.817