Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g00899 ATGCATCCTGATCAAAGAAAAAAGTCATCTGTGGATGTGGATTTCTTTACTGAATATGGTGAAGGGAGCAGATACAAAATAGAGGAAGTGATTGGTAAAGGAAGCTATGGTGTTGTTTGTTCTGCATATGATACACACACTGGAGAAAAAGTTGCTATAAAGAAAATCAACGACATATTTGAACATGTATCAGATGCCACTCGCATTCTTCGTGAGATTAAGCTTCTTAGACTATTACGCCATCCGGATATTGTGGAAATCAAGCATATTTTGTTACCTCCTTCAAGAAGGGAATTTAAAGATATATATGTTGTTTTTGAACTCATGGAATCTGATTTACATCAGGTCATCAAAGCAAATGATGATCTGACACCGGAGCATTACCAGTTTTTCCTCTATCAGCTTCTACGAGGCTTGAAGTATATACACACAGCAAATGTTTTTCACCGAGATTTAAAGCCAAAAAACATTTTGGCGAATGCCGACTGCAAATTGAAGATTTGTGACTTTGGTCTTGCTAGAGTAGCTTTTAATGATACACCAACTGCAATATTCTGGACAGATTATGTCGCAACAAGGTGGTATAGAGCTCCCGAGTTGTGCGGATCCTTTTTCTCCAAGTATACACCAGCTATAGACATATGGAGCATTGGATGCATTTTCGCAGAACTATTAACTGGAAAACCTCTTTTCCCTGGGAAGAATGTTGTTCACCAACTGGATATCATGACTGATTTTCTTGGAACACCATCTCCCGACGCCATTGCAAGGGTACGGAATGAGAAAGCTCGGAGATACTTGAGCAGCATGCGTAAGAAGAGGCCAGTTCCTTTCTCGCAGAAATTTCCTAATACAGACCCCCTTGCTCTTCGGCTGTTAGAAAGAATGTTGGCATTTGAGGCTAAGGATCGGCCTACTGCTGAAGAGGCCCTAGCAGATCCATATTTTAAAGGCTTGGCCAAGGTCGAACGAGAACCTTCTGCTCAGCCAGTTACTAAGATGGAATTTGAATTTGAGAGGCGGAGGATAACAAAGGAAGATGTACGAGAACTTATATACCGAGAAATATTGGAGTACCATCCGAAGATGTTAAAGGAATTTCTAGAGGGAGCAGAGCCAACGGGTTTCATGTATCCAAGTGCTGTAGACCTTTTCAAGAAGCAATTTGCATATCTCGAGGAGCACTATGGAAAAGGAGGAACTGTTGCTCCACCTGAGAGGCAACACGCATCTTCGTTGCCTAGAGCATGTGTGTTGTATTCTGATAACACGATGCATAATACGGCTGAGGTTGCAGACGATCTATCCAAATGTTGCATCAAAGAAGTTGAGCAACAACCTGTAGATCGTAGCAGTGCTATTCTTCCGATGACCCGGCTTCCTTTACAAGCTCCTCAAAATATGCAAGGTCTTGCTGCAAGGCCTGGCAAAGTTGTTGGTTCTTCAATGCGTTACAACAACTGTGGGGTGGCAGTGGCGGCAGAAACCGAACAGCGGAGGGTGGTTAGGAATCCTTCTGTTACAGCTCAATACGCTGCTTCGAACGGTTCATATCCGAGGAGAAATCCAAACTATAAAAATGAGAGGGCAGATGATGATGGGGTTGAAGGTTCTAATGGACTTCAGCCAAAACCTCAATACATAGCAAGAAAAGTTGCTGCTGCTCAAGGTGGAGCAGGTGGCCAGTGGTATTGA 1695 0.4289 MHPDQRKKSSVDVDFFTEYGEGSRYKIEEVIGKGSYGVVCSAYDTHTGEKVAIKKINDIFEHVSDATRILREIKLLRLLRHPDIVEIKHILLPPSRREFKDIYVVFELMESDLHQVIKANDDLTPEHYQFFLYQLLRGLKYIHTANVFHRDLKPKNILANADCKLKICDFGLARVAFNDTPTAIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAELLTGKPLFPGKNVVHQLDIMTDFLGTPSPDAIARVRNEKARRYLSSMRKKRPVPFSQKFPNTDPLALRLLERMLAFEAKDRPTAEEALADPYFKGLAKVEREPSAQPVTKMEFEFERRRITKEDVRELIYREILEYHPKMLKEFLEGAEPTGFMYPSAVDLFKKQFAYLEEHYGKGGTVAPPERQHASSLPRACVLYSDNTMHNTAEVADDLSKCCIKEVEQQPVDRSSAILPMTRLPLQAPQNMQGLAARPGKVVGSSMRYNNCGVAVAAETEQRRVVRNPSVTAQYAASNGSYPRRNPNYKNERADDDGVEGSNGLQPKPQYIARKVAAAQGGAGGQWY 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g00899 564 ProSitePatterns MAP kinase signature. 60 163 IPR003527 GO:0004707|GO:0005524|GO:0006468
Trre3g00899 564 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 24 341 - -
Trre3g00899 564 SUPERFAMILY Protein kinase-like (PK-like) 22 320 IPR011009 -
Trre3g00899 564 MobiDBLite consensus disorder prediction 510 543 - -
Trre3g00899 564 ProSiteProfiles Protein kinase domain profile. 25 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre3g00899 564 ProSitePatterns Protein kinases ATP-binding region signature. 31 55 IPR017441 GO:0005524
Trre3g00899 564 Gene3D Transferase(Phosphotransferase) domain 1 111 339 - -
Trre3g00899 564 CDD STKc_TDY_MAPK 24 361 - -
Trre3g00899 564 Pfam Protein kinase domain 25 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre3g00899 564 SMART serkin_6 25 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre3g00899 564 Gene3D Phosphorylase Kinase; domain 1 40 361 - -
Trre3g00899 564 FunFam Mitogen-activated protein kinase 15 119 - -
Trre3g00899 564 FunFam Mitogen-activated protein kinase 111 339 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g00899 Trre-Chr3 6330380 6334603 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g00899 1 564 MAP Kinase Gene Family AT5G19010 79.478 0.0 932
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_MAPK Trre3g00899 Pkinase 6.3e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g00899 - - gmx:100781957 1018.84