Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g00896 ATGGCTTCTCTTGCTTTCTTCAGAAAACCCCTTATACTATCTTTCCATTTCATATCTCGTGCAACTTCTTCCACCGTTTCCTTCAACAACAACAATGCATCAACTCTTGTTTCTCTCCATAGATCCATGGCCACTTTCACAAGAACAAAGCCTCATCTTAATGTTGGCACCATTGGGCATGTGGATCATGGAAAAACCACATTAACTGCTGCCATTACAAAGGTACTAGCTGATGAAGGTAGAGCCAAGGCCATTGCTTTTGACGAAATCGACAAGGCTCCTGAGGAGAAGAAGAGAGGAATTACTATTGCTACGGCTCATGTTGAGTATGAGACCTCAAAGAGGCATTACGCTCATGTTGATTGCCCCGGACACGCAGACTATGTTAAGAACATGATTACTGGAGCTGCACAAATGGATGGTGGAATCCTTGTGGTTTCTGCTCCAGATGGTCCGATGCCTCAAACAAAGGAACATATACTCCTCGCTCGTCAGGTTGGTGTGCCATCACTGGTATGTTTTCTAAATAAAGTAGACGCTGTTGACGATCCAGAGTTGCTTGAACTTGTCGAAATGGAGCTCCGCGAACTACTAAATTTCTATAAATTTCCCGGGGATGATATCCCGATTGTGAGAGGTTCAGCTCTGTCTGCCTTGCAAGGGACTAATGAAGAACTTGGAAGGAAAGCTATCTTGAAACTAATGGATGCTGTCGATGAATATATTTCTGATCCGGTTCGGCAGCTAGACAAGCCTTTCTTAATGCCAATAGAAGATGTTTTCTCTATTCAGGGGCGTGGAACTGTTGTCACTGGCCGTATTGAACAAGGTACTATCAAAGTTGGTGAAGAGGTTGAAATATTAGGACTAACAAAGAGTGAACCTTTGAAGACTACTGTAACTGGTGTAGAAATGTTCAAGAAAATATTGGATAGAGGGCAAGCTGGTGATAATGTAGGACTTCTTGTACGAGGACTAAAACGAGATGATGTGCAGAGAGGAATGGTTATCACGAAGCCTGGCGCATTGAAAACATATAAGAAGTTTGAAGCAGAGATTTATGTCCTATCAAAAGATGAAGGTGGCCGTCATACCGCTTTTTTCTCTAACTATATGCCTCAGTTTTACCTGAGGACAGCAGACATTACTGGAAAGGTGCAGTTACCTGAAAATGTCAAGATGGTTATGCCTGGTGATAACGTGACTGCAACTTTTGAGCTGATATTACCTGTTCCTCTTGAATGCGGACAAAGATTTGCTTTGAGAGAGGGAGGTAGGACAGTTGGTGCTGGAGTCGTCTCCAAAGTGATTGCCTAG 1317 0.4313 MASLAFFRKPLILSFHFISRATSSTVSFNNNNASTLVSLHRSMATFTRTKPHLNVGTIGHVDHGKTTLTAAITKVLADEGRAKAIAFDEIDKAPEEKKRGITIATAHVEYETSKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDAVDDPELLELVEMELRELLNFYKFPGDDIPIVRGSALSALQGTNEELGRKAILKLMDAVDEYISDPVRQLDKPFLMPIEDVFSIQGRGTVVTGRIEQGTIKVGEEVEILGLTKSEPLKTTVTGVEMFKKILDRGQAGDNVGLLVRGLKRDDVQRGMVITKPGALKTYKKFEAEIYVLSKDEGGRHTAFFSNYMPQFYLRTADITGKVQLPENVKMVMPGDNVTATFELILPVPLECGQRFALREGGRTVGAGVVSKVIA 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g00896 438 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 347 438 IPR009001 -
Trre3g00896 438 FunFam Elongation factor Tu 248 378 - -
Trre3g00896 438 Pfam Elongation factor Tu domain 2 267 338 IPR004161 GO:0005525
Trre3g00896 438 Pfam Elongation factor Tu C-terminal domain 343 436 IPR004160 -
Trre3g00896 438 Pfam Elongation factor Tu GTP binding domain 50 243 IPR000795 GO:0003924|GO:0005525
Trre3g00896 438 Gene3D Translation factors 248 378 - -
Trre3g00896 438 CDD EF_Tu 51 245 IPR041709 -
Trre3g00896 438 SUPERFAMILY Translation proteins 247 343 IPR009000 -
Trre3g00896 438 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 48 268 IPR027417 -
Trre3g00896 438 PRINTS GTP-binding elongation factor signature 118 128 IPR000795 GO:0003924|GO:0005525
Trre3g00896 438 PRINTS GTP-binding elongation factor signature 98 106 IPR000795 GO:0003924|GO:0005525
Trre3g00896 438 PRINTS GTP-binding elongation factor signature 134 145 IPR000795 GO:0003924|GO:0005525
Trre3g00896 438 PRINTS GTP-binding elongation factor signature 54 67 IPR000795 GO:0003924|GO:0005525
Trre3g00896 438 PRINTS GTP-binding elongation factor signature 171 180 IPR000795 GO:0003924|GO:0005525
Trre3g00896 438 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 50 246 IPR000795 GO:0003924|GO:0005525
Trre3g00896 438 CDD EFTU_II 253 341 IPR033720 -
Trre3g00896 438 Hamap Elongation factor Tu [tuf]. 41 438 IPR004541 GO:0003746|GO:0005525|GO:0006414
Trre3g00896 438 PANTHER ELONGATION FACTOR TU-RELATED 42 437 - -
Trre3g00896 438 CDD EFTU_III 344 433 - -
Trre3g00896 438 Gene3D - 42 245 IPR027417 -
Trre3g00896 438 NCBIfam elongation factor Tu 42 437 IPR004541 GO:0003746|GO:0005525|GO:0006414
Trre3g00896 438 Gene3D Translation factors 382 437 - -
Trre3g00896 438 NCBIfam small GTP-binding protein domain 54 190 IPR005225 GO:0005525
Trre3g00896 438 FunFam Elongation factor Tu 41 245 - -
Trre3g00896 438 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 91 106 IPR031157 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g00896 Trre-Chr3 6317842 6320742 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g00896 48 436 Eukaryotic Initiation Factors Gene Family AT5G60390 29.977 3.52e-44 158
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g00896 K02358 - gmx:102667962 750.74