Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g00887 ATGATTGTAAAGGAGCATCCTGTTGGTACTGAGCTGGTAATGAGTAATGCAATTGGGGATGAGGAAATTGATTTTTCCTGTGATCCTTATATAGGGTTAGAGTTTTTTAATGCGGATGATGCACTTAAGTTTTATATATCATATGCTAATCGAATGGGGTTTAAAGTTCGGATTGGTCAGCTTTATCGATCGAGAACTAATGGATCGGTTTCTTCTCGAAGATATGTGTGTTCGAAGGAGGGACATCAGCTTAGCTCAAGAACTGGTTGTCCGGCGTTCATAAGGGTACAATTAAATGATTCTGGGAAGTGGGTTGTTGATCATTTTCACAAGGATCATAACCATAGTCTTGAAAATGAAAGTGAAAATTTCGATCCAACATTGCAGTCAAATGGTGCTACAGCTATTGATTCTTCTACTACTGAAGTCACTCGTAGGCCGAGGAAGAAAAAGCTTGAAGTTGCCAATGATGAACCTATTTGTCCCTTTGGTGTTATTGATTTCAAGCGCCTGAGAAAGGAAGAACTTGAAGGACAGGCCAGAATCGAACCACATGTTGGTCAGGAGTTTAATACCCCTAATGAAGCCTACCAATTTTATCATGCTCATGCAGCATATTTGGGTTTTGGAATTCGAATCGGTCAATTGTTTCGGTCCAAAAATGACGGATTGATTACATCGCGACGCTTTGTGTGTTCAAAAGAAGGGTTCCAGCATCCTTCAAGAGTTGGTTGTAAGGCTTATTTAAGGATTAAGAGACAACCATCAGGAAAATGGGTAGTCGACCGTCTTGAAAAAGATCATAATCATGATCTGGGCCTTGAAAAGGAACATAAGACAAAAACTCTTCCTGCTTGTAACATTTTGAATGAGGAGGTAAATACTGAATTGGTGAATGGCGACATATTTAGGATAGATAACTACCCTGTCCTGAGAGGAGGTAGACAAAATCACATCAGAAGTGATTGGTACAACATGCTTTTAGAGTATTTTCAATCAAAACAAGCTGAAGATACAGGATTCTTTTATTCCATGGAAGTTGATAATGGTAATTGCATGAGCATATTCTGGGCTGACGGAAGATCTAGATACTCATGTAGTCAGTTTGGCGATGTCCTTGTTGTAGACACATCGTATAGAAAAAGTGTCTATATGGTACCATTTGCTACTTTTGTTGGAGTTAACCACCACAAGCAACCTGTGCTTCTTGGATGTGCTCTAATTGCTGATGAATCTGAAGAGTCTTTCACTTGGTTGTTTCAGACATGGCTAAGAGCAATGTCTGGACGGCAGCCTCTGTCAGTAATAGCTGATCAAGACGTTCCAATCCAGAGGGCAATTGCAAAAGTCTTTCCAGTAACCTATCATCGCTTTTCGTTGTGGCAAATTAATGCAAAGGAACAAGAGCTCGCAGGTCTGATGTGTAATGGATTCACAAAAGATTACGAAAAGTGTGTTTACCAGAGCCAGACAGTCGACGAATTTGACACTGCATGGAATGCTCTACTCATCAAATATGGATTGAAGGACAATACTTGGTTAAACGAAATGTATGAGAAGCGTGCATCCTGGGTTCCATTCTATTTAAAGGGTACATTTTGTGCTGGAATTCCTATGAAAGAAAGCATGGAATCATTCTTTGGTGGACTTTTAAATGGCCAAACACCTATCGCGGAATTTATTCCACGGTACGAAAGAGGTCTTGAACGACGTCGTGAAGGTGAAAGAAAAGAAGATTTTGACACTTCTAATTTTCAACCTTTTTTGCAAACAAAAGAGCCCATGGAAGAACAATGTAGAAGGCTTTACACTCTTGCAATATTCAAAGTATTTCAAAAAGAACTTTTGCAGTGCTATAGTTATCTTGGGTTTAAAATCTACGAAGAAGGACCCCTCAGCAGATATTTGGTGCGTAAGTGTGGACATGATGATATGGAGAAGTATGTAGTTACATTCAATGCATCCAATCTTGACATAAGTTGCAGCTGTCAGATGTTTGAATACGAAGGTGTTCTATGCAGACATGTGTTGAGGGTTTTCCAAATATTGGAATTAAGAGAAGTTCCTTCTCGCTACATCTTGCACCGATGGACGAGAAATGCCGAGGATGGTGTTTTTCCAGACAGAGAATCATGGAGTAGCTCTCAGGAGCTAAAAAGTTTGATGCTATGGAGTCTAAGAGAAACAGCATCTAAATACATTGATGCTGGTGCATCATCCATTGAAAAGTATAAACTTGCCTATGAGATTTTGCGAGAGGGTGGGAGAAAACTGTGTTGGCATAGGTGA 2289 0.3984 MIVKEHPVGTELVMSNAIGDEEIDFSCDPYIGLEFFNADDALKFYISYANRMGFKVRIGQLYRSRTNGSVSSRRYVCSKEGHQLSSRTGCPAFIRVQLNDSGKWVVDHFHKDHNHSLENESENFDPTLQSNGATAIDSSTTEVTRRPRKKKLEVANDEPICPFGVIDFKRLRKEELEGQARIEPHVGQEFNTPNEAYQFYHAHAAYLGFGIRIGQLFRSKNDGLITSRRFVCSKEGFQHPSRVGCKAYLRIKRQPSGKWVVDRLEKDHNHDLGLEKEHKTKTLPACNILNEEVNTELVNGDIFRIDNYPVLRGGRQNHIRSDWYNMLLEYFQSKQAEDTGFFYSMEVDNGNCMSIFWADGRSRYSCSQFGDVLVVDTSYRKSVYMVPFATFVGVNHHKQPVLLGCALIADESEESFTWLFQTWLRAMSGRQPLSVIADQDVPIQRAIAKVFPVTYHRFSLWQINAKEQELAGLMCNGFTKDYEKCVYQSQTVDEFDTAWNALLIKYGLKDNTWLNEMYEKRASWVPFYLKGTFCAGIPMKESMESFFGGLLNGQTPIAEFIPRYERGLERRREGERKEDFDTSNFQPFLQTKEPMEEQCRRLYTLAIFKVFQKELLQCYSYLGFKIYEEGPLSRYLVRKCGHDDMEKYVVTFNASNLDISCSCQMFEYEGVLCRHVLRVFQILELREVPSRYILHRWTRNAEDGVFPDRESWSSSQELKSLMLWSLRETASKYIDAGASSIEKYKLAYEILREGGRKLCWHR 762
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g00887 762 ProSiteProfiles Zinc finger SWIM-type profile. 648 684 IPR007527 GO:0008270
Trre3g00887 762 Pfam SWIM zinc finger 648 681 IPR007527 GO:0008270
Trre3g00887 762 Pfam FAR1 DNA-binding domain 198 272 IPR004330 -
Trre3g00887 762 Pfam FAR1 DNA-binding domain 43 117 IPR004330 -
Trre3g00887 762 SMART 26again6 659 686 IPR006564 GO:0008270
Trre3g00887 762 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 20 122 IPR031052 GO:0006355
Trre3g00887 762 Pfam MULE transposase domain 372 465 IPR018289 -
Trre3g00887 762 MobiDBLite consensus disorder prediction 121 141 - -
Trre3g00887 762 MobiDBLite consensus disorder prediction 117 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g00887 Trre-Chr3 6235782 6238070 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Trre3g00887 MULE 1e-22 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g00887 - - mtr:112419201 1416.75