Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g00879 ATGGGTTGTGTTCATGGAAAGTGTTGTAGTCGTTATCCTGCACCATCAATTGGTGGCTCTAGAGACTATAGAGAAATTGGTTCTTACGGTGCACAAAGGAAGCACTTGCTCACACAAAGATCACTGCATTTTGTTGATGTTCCTTCCCACAACTTCACTTTTGAATACTCTGTTCTTACTCAGAGAGGTTACTACCCTGACTCACCTGATAAAGAAAACCAAGATTGTTATTGTGTTAGGACACTATTGCAAGGTAATCCAAGTGTTCATTTCTTTGGTGTTTTTGATGGACATGGTGAATTTGGTGGAAGGTGTTCTAATTTTGTTAAGGATAGGTTGGTTGAAAAATTGTCAAATGATTCTGCATTGTTGGAGGATCCTGTTAAGGCTTATAATTCGGCATTTTTGGCTACAAATGAGGAATTGCATAAGAATGAGATTGATGATTGTATGAGTGGTACTACCGCGATTACGGTGTTGGTGATAGGGGACACACTTTATGTTGCGAATGTTGGTGATTCGAGGGCGGTGTTGGCTGTTAAGGATGGGAATAGAATTGTTGCTGAGGATTTGTCTTCTGATCAGACACCTTTTAGGAGAGATGAGTATGAGAGAGTGAAGCTTTGTGGTGCTAGGGTGCTGAGTGTTGATCAAGTTGAAGGGCATAAGGATCCAGATATTCAAACTTGGGGTGATGAAGAGAGTCAGGGTGATGATCCTCCGCGATTGTGGGTTCAGAATGGGATGATTCCTGGAGCTGCTTTTACAAGGAGTGTAGGAGATAGTTTGGGTGAGACTATTGGTGTTATTGCGGTTCCGGAGGTTTTAACGGTTAAGCTTACACCAAATCATCTTTTCTTTGTTGTTGCGAGTGATGGTGTATTTGAGTTCCTATCAAGCCAAACTGTTGTTGATATGGCTTCAAGTTATTCAGATCCGCGTGATGCATGTGCTGCCATTGCTGGAGAGTCTTACAAATTATGGTTGGAACATGAGGGCCGAACAGATGATATAACAATTATCATTGTTCAGATCAAAGGCCTGTCTAATTCAGGTACATCTGAATACGTATCAGGAGAGATCAACGTCGGTACTGTAACGAAAGCCAAAAAGGGAAAGGGAACTTCTGGTATATCTGCCTCTACCGGTGGAGATGTTCATCGTGCCATGAGGAGCGGTTTATCCGATTCTATGCCCTGTCAGCATGTGGTTTCATCAAGAAGCCAAGCCATAGTGGTTCCCTCTCCCACATGTCAAAGTCCAGTTGAATTGTGA 1275 0.4251 MGCVHGKCCSRYPAPSIGGSRDYREIGSYGAQRKHLLTQRSLHFVDVPSHNFTFEYSVLTQRGYYPDSPDKENQDCYCVRTLLQGNPSVHFFGVFDGHGEFGGRCSNFVKDRLVEKLSNDSALLEDPVKAYNSAFLATNEELHKNEIDDCMSGTTAITVLVIGDTLYVANVGDSRAVLAVKDGNRIVAEDLSSDQTPFRRDEYERVKLCGARVLSVDQVEGHKDPDIQTWGDEESQGDDPPRLWVQNGMIPGAAFTRSVGDSLGETIGVIAVPEVLTVKLTPNHLFFVVASDGVFEFLSSQTVVDMASSYSDPRDACAAIAGESYKLWLEHEGRTDDITIIIVQIKGLSNSGTSEYVSGEINVGTVTKAKKGKGTSGISASTGGDVHRAMRSGLSDSMPCQHVVSSRSQAIVVPSPTCQSPVEL 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g00879 424 FunFam Phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein 50 347 - -
Trre3g00879 424 SUPERFAMILY PP2C-like 42 347 IPR036457 -
Trre3g00879 424 CDD PP2Cc 71 345 IPR001932 -
Trre3g00879 424 ProSitePatterns PPM-type phosphatase domain signature. 91 99 IPR000222 GO:0043169
Trre3g00879 424 PANTHER PROTEIN PHOSPHATASE 71 344 IPR015655 GO:0004722|GO:0006470
Trre3g00879 424 SMART PP2C_4 55 343 IPR001932 -
Trre3g00879 424 ProSiteProfiles PPM-type phosphatase domain profile. 55 345 IPR001932 -
Trre3g00879 424 Pfam Protein phosphatase 2C 84 320 IPR001932 -
Trre3g00879 424 Gene3D - 42 347 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g00879 Trre-Chr3 6182593 6185310 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g00879 1 350 PP2C-type Phosphatase Gene Family AT3G06270 72.571 0.0 513
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g00879 - - gsj:114373061 711.064
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre3g00879 3 6182593 6185310 Trre3g00879 3 6182593 6185310 ECH
Trre15g04722 15 57841229 57843766 Trre3g00879 3 6182593 6185310 PCT