Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g00872 ATGGAATCAGGCGCTTTAGCTCTTCTCAAGAGGGACGCCTTCAACAAGATATTACAATATGCGAGCAAAAATGGACTCCCACAAGGTTTAAAGGACCAAATTGTGGCACATACACAACTGAAGTTCAAGACAGCAGAGTTACAGCAAGAAGAAGTGCTACAGAACCTACCTACAGCAATTAGGGCCGGTATTGCTCAGCATCTTTTCCACGACGTGGTTGAAAAATCATATTTATTTAAAGGATTCTCAGATGATTTTATATCCCAGCTGGTATCAGATATGAAAGCAGAATACTACCCATCAAAGGTTGACATTATCTTGCAAAATGAGATGCCAGCATATTTCTACATTTTGAAGTCATTTGGGAAGGAGATGGTGAAACCAAATAGTGAAGATGGGAAGGCAATCATCAGCAACTTTTACTCAGGACAAAGAGAAGATTTCAGTCCACTATCAAGCCTAGTCCCCATTAGAGTCAAAATCCATGGACATAACCACAATGGAAAAATTGAAAATAGAACAGCACCAAAGCTCATTATTCTACCAGATTCAGTCGAAGATCTTTTCAACATAGCAGAGAAAAAATTTGGAAAAAGAGGAGCAAAATTCTTATGGTCGAAGGCTCGGAAGTAG 633 0.3934 MESGALALLKRDAFNKILQYASKNGLPQGLKDQIVAHTQLKFKTAELQQEEVLQNLPTAIRAGIAQHLFHDVVEKSYLFKGFSDDFISQLVSDMKAEYYPSKVDIILQNEMPAYFYILKSFGKEMVKPNSEDGKAIISNFYSGQREDFSPLSSLVPIRVKIHGHNHNGKIENRTAPKLIILPDSVEDLFNIAEKKFGKRGAKFLWSKARK 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g00872 210 Gene3D Jelly Rolls 45 144 IPR014710 -
Trre3g00872 210 ProSiteProfiles cAMP/cGMP binding motif profile. 78 144 IPR000595 -
Trre3g00872 210 SUPERFAMILY cAMP-binding domain-like 11 120 IPR018490 -
Trre3g00872 210 Pfam KHA, dimerisation domain of potassium ion channel 158 202 IPR021789 -
Trre3g00872 210 ProSiteProfiles KHA domain profile. 158 210 IPR021789 -
Trre3g00872 210 CDD CAP_ED 78 141 IPR000595 -
Trre3g00872 210 PANTHER POTASSIUM CHANNEL AKT1 11 120 IPR045319 GO:0005249|GO:0006813
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g00872 Trre-Chr3 6152308 6155964 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g00872 128 201 Ion Channels AT4G32650 42.308 3.05e-08 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g00872 K21867 - sspl:121784547 176.792