Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g00869 ATGGCATCACTTGTTGCCAGTGGTAACAGTCAAATGTCTTCTGTCCAAGAAAAAGGAAGTCGGAATAAGAGAAAATTCAGGGCTGATCCACCTTCAGGGGAGCCAAATAAGATTATATCTTCACCTCAACATGACAGCCTAAGTTATGAATTCGCTGCTGAAAAAATTGAAATAACCCCAACTTTTGGGCGAGTCACAGCTTCTGACTTGTGCAGTGTTAGCCATGATTGTTCTGATGGCTTGAAGCTCGACCTTGGATTATCTAGCCCTGTTGTTTCACCTGAGGTTAGGGTTAGCCATCCTAAGGAGGAACTAGAGGTGGTCGAATCCCACGGTGCTGATTGGAGTGATCACACAGAAACTCAGTTGGAAGAACTTGTGTTGAGCAATTTGCAAACCATTTTCAAGAGTGCAATAAAAAAAGTTGTTGCTTGTGGCTACACTGAAGATGTTGCTACAAAGGCTATGTTAAGGCCTGGCGTCTGTTATGGATGCAAAGACACTGTGTCTAATATAGTTGAGAACACTTTAGCTTTTCTAAGAAACGGCCAAGAGTTTGATCCTTCACGAGAGCACTATTTTGAAAATTTAGTGCAGCTTCAGAAGTATATCTTAGCTGAATTGGTCTGTGTTCTTCGAGAGGTTAGGCCATTTTTCAGTGTTGGGGATGCCATGTGGTGTTTGTTAATTTGTGACATGAATGTGTCACACGCTTGTGCAATGGATGGCGATCCTTTTAGCAGTTTATGCAATGATGGCAATGGTGATGGCTGTTCTTCTGTCCAGAGTGAATCACAATCAAAAGTTGAAACAAAAAGTCCCGAGTTAAGTCTTCCAAGTCCTTGTAATTCAATTCCCGCAGTTTCTCAATCTGAGAAATCCATTGTGGCACAAAATTCTCAAACTGTCGGGGGACTCGTAGAGAAACAGAGTGCTAATTCTGCTGACAAGTCATCTAGTGCTTCTGGAACCCCTCATTCTCCCTTGCTACATGAAAAGTGTGGGAGTGTTAGAAAGGTCCATCCCAGTAGCACCAAGAGGGACTACATTTTTCGTCAGAAGTCAATCCACGTGGAAAAAAATTATCGGACATACGGGTCTAAAGGCTCTTCAAGAGGAGGAAAGCTGAGTGGCTTGAGTGGTTTAATCTTAGATAAAAAACTTAAATCTGTTTCAGAATCTACCACCATAAACTTAAAGAGTGCATCCATAAACATAAGCAAGGCAGTGGGAATTAATGTCACTCAAGACAATCTCAACACTGATTTATCATCTAATGATGGACCATCTTCCCCTACTTCATTTAGCCTGGATTCTAGTGGTGCTATCTCTCGTGCATCTGATCCTTCATCTTCAGAACATGAAGCAAATTCTATACCTGCAGTCAGTATCCCCCCAGATGCATTACCAGCTACAGATACTGACCTTTCTCTTTCACTGTCTTCAAAAAGTAATTCTACAACACCTATATGCTGCGGTCACAAGGTAGCTAGTAGTAGCTGTGTGGGGATACCATATGACAAGTCCATGGGACAATGGTTGCCCCAAGATAGAAAGGATGAGCTGATTTTAAAGATGGTTCCGAGGGTTCGGGAGCTGCAAAACGAGCTTCAAGAATGGACAGAGTGGGCAAATCAAAAGGTGATGCAGGCTGCTCGTCGGTTGAGTAAGGACAAGGCTGAGCTTAAGACACTAAAACAAGAGAAAGATGAAGTTGAACGTCTTAAAAAGGAGAAACAATGTCTAGAAGAAAACACAATGAAAAAACTTTTTGAGATGGAAAATGCCTTGGGTAAAGCAGGTGGACAGGTCGAACGAGCTAATACTGCAGTACGGAAGCTCGAGATGGAGAATGCTGCATTGAGGAAAGAGATGGAGGCTGCTAAGTTACGTGCGGCACAATCAGCAACAAACTTTCAAGAGGCCTCGAAAAGGGAAAAGATGACCCAAATGAAGTTTCAATCATGGGAGAATCAGAAATCGCAGTTACAGGAAGAGCTAAATACTGAAAAAAGCAAATTGACACAGATATTGAAGGAATCAAAGCAAGCCGAAGTGCAAGCGGAGAAATTAGAGGCTAAACGGCGGCAGGCAGCAAGGAAAACTGAAGAGCTTCTCTTGCTAGCCAGTTCTATAAGAAAAGAAAGAGAACAAATTGAGGAGACAGCCAGAGCCAAGGAGGAAAGGATCAAATTAGAAGCAGAGATGGAGCTGCAAAGATACAAAGATGACATCCAGAAAATCGAAAAGGAAATTTCACAAATAAGACAGAAGTCCGACTCTTCAAAAATTGCTGCACTAAAACGAGGAATTGATGGAAGCTATGCCGGTAGCTGCAAGGACATGAAAAACGGTTCTGCCCCCGAAGAACCTCAGACCGCGTCCATTTCAGAACTGGTTCAGAAGTTAAATAACTTCTCGATGAAGGGAGGAGGTGTGAAACGTGAAAGGGAGTGCGTGATGTGCCTTTCAGAGGAGATGTCCGTTGTATTCCTTCCATGTGCTCATCAGGTTGTTTGCACAAAGTGCAATGAGCTCCATGAGAAGCAGGGAATGCAAGAATGCCCTTCTTGCAGGAGCCCCATCCAGGAGCGTATTTCTGTGCGTTATGCGCGTACATAA 2622 0.4314 MASLVASGNSQMSSVQEKGSRNKRKFRADPPSGEPNKIISSPQHDSLSYEFAAEKIEITPTFGRVTASDLCSVSHDCSDGLKLDLGLSSPVVSPEVRVSHPKEELEVVESHGADWSDHTETQLEELVLSNLQTIFKSAIKKVVACGYTEDVATKAMLRPGVCYGCKDTVSNIVENTLAFLRNGQEFDPSREHYFENLVQLQKYILAELVCVLREVRPFFSVGDAMWCLLICDMNVSHACAMDGDPFSSLCNDGNGDGCSSVQSESQSKVETKSPELSLPSPCNSIPAVSQSEKSIVAQNSQTVGGLVEKQSANSADKSSSASGTPHSPLLHEKCGSVRKVHPSSTKRDYIFRQKSIHVEKNYRTYGSKGSSRGGKLSGLSGLILDKKLKSVSESTTINLKSASINISKAVGINVTQDNLNTDLSSNDGPSSPTSFSLDSSGAISRASDPSSSEHEANSIPAVSIPPDALPATDTDLSLSLSSKSNSTTPICCGHKVASSSCVGIPYDKSMGQWLPQDRKDELILKMVPRVRELQNELQEWTEWANQKVMQAARRLSKDKAELKTLKQEKDEVERLKKEKQCLEENTMKKLFEMENALGKAGGQVERANTAVRKLEMENAALRKEMEAAKLRAAQSATNFQEASKREKMTQMKFQSWENQKSQLQEELNTEKSKLTQILKESKQAEVQAEKLEAKRRQAARKTEELLLLASSIRKEREQIEETARAKEERIKLEAEMELQRYKDDIQKIEKEISQIRQKSDSSKIAALKRGIDGSYAGSCKDMKNGSAPEEPQTASISELVQKLNNFSMKGGGVKRERECVMCLSEEMSVVFLPCAHQVVCTKCNELHEKQGMQECPSCRSPIQERISVRYART 873
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g00869 873 MobiDBLite consensus disorder prediction 421 458 - -
Trre3g00869 873 MobiDBLite consensus disorder prediction 1 17 - -
Trre3g00869 873 Pfam Family of unknown function (DUF6592) 130 241 IPR046527 -
Trre3g00869 873 Coils Coil 548 585 - -
Trre3g00869 873 PANTHER OS05G0141500 PROTEIN 10 868 IPR046934 -
Trre3g00869 873 MobiDBLite consensus disorder prediction 421 487 - -
Trre3g00869 873 MobiDBLite consensus disorder prediction 261 282 - -
Trre3g00869 873 SUPERFAMILY RING/U-box 801 866 - -
Trre3g00869 873 Coils Coil 604 638 - -
Trre3g00869 873 CDD RING-HC_MIP1-like 814 868 - -
Trre3g00869 873 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 797 869 IPR013083 -
Trre3g00869 873 ProSiteProfiles Zinc finger RING-type profile. 819 859 IPR001841 -
Trre3g00869 873 MobiDBLite consensus disorder prediction 308 331 - -
Trre3g00869 873 MobiDBLite consensus disorder prediction 308 326 - -
Trre3g00869 873 MobiDBLite consensus disorder prediction 1 43 - -
Trre3g00869 873 Pfam Zinc finger, C3HC4 type (RING finger) 816 864 - -
Trre3g00869 873 Coils Coil 653 758 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g00869 Trre-Chr3 6136741 6139925 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g00869 819 868 C3H Transcription Factor Family AT1G73950 42.000 7.56e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g00869 - - gmx:100777140 1187.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre3g00869 3 6136741 6139925 Trre3g00869 3 6136741 6139925 ECH