Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g00858 ATGAGCGATGAAGCACAAGAACCACAACCACCACCACCACTGCAACCTTCTTCCTCTAGCAATGAAGTTCATAAGCCAGAAAGAAGACAAATGGATAAAAGGGAGACTCTTTCAAGAGCCAGACGACCAAGACCTGGATTTTCTGATTCTTTTTCTAGTGTTGACTTTGCAAATTTAGAGATAGATGAAGGAAACCAGTCTGATCAGTATTCTCCAAGAAGTCAAGAATCTGATACACCAAGTTCAAGAGCAAGCACTTCTGATTCTGAGGGATGTCCAAGAGGAAATCTTACTAATAATCAGTGGCGCGGTTTCTTTAAACTACTGAAGAAAGGATCCGAAAAGCCTTTTCATACCTTGAAAGGATCAGAAAAGCCTTTTCATACCTTTCATCCATTGAAAAATGTTCCAAAACTTACTAGAAGAAAAAGCAAAAGAATTAGAGAGGATCTTATCCCTTCTCTCAATTCTCCGGCTCTTCAGTCTTCTTTTGACGCCGAGTTTTGCTGCTTCAAATCTTCGTGGAAGAATTTCACTATCTCAGAAATCCAAGCTGCAACCAATAACTTTAGCCATGATAATTTGCTTGGTGAGGGAGGCTATGCTGAGGTTTACTTAGGTAAATTGGAAGATGGAAACTTTGTTGCCATTAAAAAGTTGACAAAAGGTAGCCAAGAAGAAATGACTGCAGATTTTTTGTCTGAGCTTGGCATTATAGTGCATGTGGATCACCCCAATATTGCTAGATTGATTGGATATGGTGTTGAAGGTGGAATGTTTCTTGTTCTTCAATTGTCTCCTCATGGAAGCTTGTCGTCCTTACTTTATGGACCTAGAGAGAAATTGAATTGGAGCCTTAGATATAAGATTGTTTTGGGGACTGCTGAGGGTCTTCGCTATCTGCACGAGGGATGTCAAAGAAGGATTATTCACAAAGATATCAAGGCTTCGAATATTCTTCTCTCAGAGGATTTTGAGCCTCAGATATCTGATTTTGGGCTCGCAAAGTGGTTACCTGATCAATGGACTCACCATACTGTCTCCAAAGTGGAAGGCACATTTGGCTACCTTCCTCCTGAATTCTTCATGCATGGTATAGTAGATGAAAAAACTGATGTATATGCTTATGGTGTACTATTATTGGAACTTATTACTGGAAGACAAGCTTTGGATAGTTCACAAAAAAGTCTGGTGATGTGGGCAAAACCTTTGCTATCTAGTAATAACATCAAAGAGCTAGTTGATCCAATTTTGCATGATGCTTATGATGAAGAACAGATGAAACTTGTAATATTAACAGCTTCTATGTGTATAGACCAGGCCTCGATACTGCGACCACAAATGAGTGAGGTCTTACAGATACTAAGAGGTGAAGAACAAAGCAAGAAAATCTTGAAAGATAGACAAAACTCGAAACTTCATAGGACATACTCTGAAGAACTATTTGATGCAGAAGATTACAACTCAACAAAGTTCTTAAGCGAGAGGGATCGACACATGGAGACAATTTTAGGCACTAGTAGTCTAGATTAG 1533 0.392 MSDEAQEPQPPPPLQPSSSSNEVHKPERRQMDKRETLSRARRPRPGFSDSFSSVDFANLEIDEGNQSDQYSPRSQESDTPSSRASTSDSEGCPRGNLTNNQWRGFFKLLKKGSEKPFHTLKGSEKPFHTFHPLKNVPKLTRRKSKRIREDLIPSLNSPALQSSFDAEFCCFKSSWKNFTISEIQAATNNFSHDNLLGEGGYAEVYLGKLEDGNFVAIKKLTKGSQEEMTADFLSELGIIVHVDHPNIARLIGYGVEGGMFLVLQLSPHGSLSSLLYGPREKLNWSLRYKIVLGTAEGLRYLHEGCQRRIIHKDIKASNILLSEDFEPQISDFGLAKWLPDQWTHHTVSKVEGTFGYLPPEFFMHGIVDEKTDVYAYGVLLLELITGRQALDSSQKSLVMWAKPLLSSNNIKELVDPILHDAYDEEQMKLVILTASMCIDQASILRPQMSEVLQILRGEEQSKKILKDRQNSKLHRTYSEELFDAEDYNSTKFLSERDRHMETILGTSSLD 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g00858 510 MobiDBLite consensus disorder prediction 1 98 - -
Trre3g00858 510 ProSiteProfiles Protein kinase domain profile. 190 465 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre3g00858 510 SUPERFAMILY Protein kinase-like (PK-like) 175 480 IPR011009 -
Trre3g00858 510 FunFam receptor-like cytosolic serine/threonine-protein kinase RBK2 267 469 - -
Trre3g00858 510 ProSitePatterns Serine/Threonine protein kinases active-site signature. 309 321 IPR008271 GO:0004672|GO:0006468
Trre3g00858 510 Gene3D Transferase(Phosphotransferase) domain 1 267 482 - -
Trre3g00858 510 Gene3D Phosphorylase Kinase; domain 1 163 264 - -
Trre3g00858 510 PANTHER OS08G0249100 PROTEIN 55 489 IPR046958 -
Trre3g00858 510 ProSitePatterns Protein kinases ATP-binding region signature. 196 219 IPR017441 GO:0005524
Trre3g00858 510 SMART serkin_6 190 430 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre3g00858 510 MobiDBLite consensus disorder prediction 51 98 - -
Trre3g00858 510 MobiDBLite consensus disorder prediction 1 17 - -
Trre3g00858 510 Pfam Protein kinase domain 192 400 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre3g00858 510 FunFam Receptor-like cytosolic serine/threonine-protein kinase RBK2 160 264 - -
Trre3g00858 510 MobiDBLite consensus disorder prediction 22 42 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g00858 Trre-Chr3 6063101 6066578 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g00858 161 475 Receptor kinase-like Gene Family AT1G53420 39.319 8.71e-71 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Trre3g00858 Pkinase 1.1e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g00858 - - gmx:102670300 797.734